Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCATGGGTTCAGGACTCTTCAAGCCTCGTGTTCATCCGGACCTCCGTGATGTTTTCTCTAAGATGTCTTTCTTTGACAAGATTGGCTTTCTAgtacgtttttaattaatttttaagagtaatttatatatcaagtatttatttgatgtacatactgcatacaatatacacatacatacctattccttaagaa...

Basic information

species Oryza sativa
transcript LOC_Os12g26290.5
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29614999|gb|CB620012.1|CB620012
EST:     TCCGTGATGTTTTCTCTAAGATGTCTTTCTTTGACAAGATTGGCTTTCTA                         TTCATTCATGCATTTGACAAGAGAAACCTGTGGCACAAGGTGCCTGTTCCG
genomic: TCCGTGATGTTTTCTCTAAGATGTCTTTCTTTGACAAGATTGGCTTTCTAgtacgttttt ... gttcatgtagTTCATTCATGCATTTGACAAGAGAAACCTGTGGCACAAGGTGCCTGTTCCG
EST: gi|29625915|gb|CB630926.1|CB630926
EST:     TCCGTGATGTTTTCTCTAAGATGTCTTTCTTTGACAAGATTGGCTTTCTA                         TTCATTCATGCATTTGACAAGAGAAACCTGTGGCACAAGGTGCCTGTTCCG
genomic: TCCGTGATGTTTTCTCTAAGATGTCTTTCTTTGACAAGATTGGCTTTCTAgtacgttttt ... gttcatgtagTTCATTCATGCATTTGACAAGAGAAACCTGTGGCACAAGGTGCCTGTTCCG
EST: gi|29673746|gb|CB670021.1|CB670021
EST:     TCCGTGATGTTTTCTCTAAGATGTCTTTCTTTGACAAGATTGGCTTTCTA                         TTCATTCATGCATTTGACAAGAGAAACCTGTGGCACAAGGTGCCTGTTCCG
genomic: TCCGTGATGTTTTCTCTAAGATGTCTTTCTTTGACAAGATTGGCTTTCTAgtacgttttt ... gttcatgtagTTCATTCATGCATTTGACAAGAGAAACCTGTGGCACAAGGTGCCTGTTCCG
EST: gi|88406507|gb|CI599000.1|CI599000
EST:     TCCGTGATGTTTTCTCTAAGATGTCTTTCTTTGACAAGATTGGCTTTCTA                         TTCATTCATGCATTTGACAAGAGAAACCTGTGGCACAAGGTGCCTGTTCCG
genomic: TCCGTGATGTTTTCTCTAAGATGTCTTTCTTTGACAAGATTGGCTTTCTAgtacgttttt ... gttcatgtagTTCATTCATGCATTTGACAAGAGAAACCTGTGGCACAAGGTGCCTGTTCCG
EST: gi|29627764|gb|CB632775.1|CB632775
EST:     TCCGTGATGTTTTCTCTAAGATGTCTTTCTTTGACAAGATTGGCTTTCTA                         TTCATTCATGCATTTGACAAGAGAAACCTGTGGCACAAGGTGCCTGTTCCG
genomic: TCCGTGATGTTTTCTCTAAGATGTCTTTCTTTGACAAGATTGGCTTTCTAgtacgttttt ... gttcatgtagTTCATTCATGCATTTGACAAGAGAAACCTGTGGCACAAGGTGCCTGTTCCG
EST: gi|29673709|gb|CB669984.1|CB669984
EST:     TCCGTGATGTTTTCTCTAAGATGTCTTTCTTTGACAAGATTGGCTTTCTA                         TTCATTCATGCATTTGACAAGAGAAACCTGTGGCACAAGGTGCCTGTTCCG
genomic: TCCGTGATGTTTTCTCTAAGATGTCTTTCTTTGACAAGATTGGCTTTCTAgtacgttttt ... gttcatgtagTTCATTCATGCATTTGACAAGAGAAACCTGTGGCACAAGGTGCCTGTTCCG
EST: gi|88326464|gb|CI659896.1|CI659896
EST:     TCCGTGATGTTTTCTCTAAGATGTCTTTCTTTGACAAGATTGGCTTTCTA                         TTCATTCATGCATTTGACAAGAGAAACCTGTGGCACAAGGTGCCTGTTCCG
genomic: TCCGTGATGTTTTCTCTAAGATGTCTTTCTTTGACAAGATTGGCTTTCTAgtacgttttt ... gttcatgtagTTCATTCATGCATTTGACAAGAGAAACCTGTGGCACAAGGTGCCTGTTCCG
EST: gi|33676616|gb|CF304855.1|CF304855
EST:     TCCGTGATGTTTTCTCTAAGATGTCTTTCTTTGACAAGATTGGCTTTCTA                         TTCATTCATGCATTTGACAAGAGAAACCTGTGGCACAAGGTGCCTGTTCCG
genomic: TCCGTGATGTTTTCTCTAAGATGTCTTTCTTTGACAAGATTGGCTTTCTAgtacgttttt ... gttcatgtagTTCATTCATGCATTTGACAAGAGAAACCTGTGGCACAAGGTGCCTGTTCCG
EST: gi|29623660|gb|CB628671.1|CB628671
EST:     TCCGTGATGTTTTCTCTAAGATGTCTTTCTTTGACAAGATTGGCTTTCTA                         TTCATTCATGCATTTGACAAGAGAAACCTGTGGCACAAGGTGCCTGTTCCG
genomic: TCCGTGATGTTTTCTCTAAGATGTCTTTCTTTGACAAGATTGGCTTTCTAgtacgttttt ... gttcatgtagTTCATTCATGCATTTGACAAGAGAAACCTGTGGCACAAGGTGCCTGTTCCG
EST: gi|29626272|gb|CB631283.1|CB631283
EST:     TCCGTGATGTTTTCTCTAAGATGTCTTTCTTTGACAAGATTGGCTTTCTA                         TTCATTCATGCATTTGACAAGAGAAACCTGTGGCACAAGGTGCCTGTTCCG
genomic: TCCGTGATGTTTTCTCTAAGATGTCTTTCTTTGACAAGATTGGCTTTCTAgtacgttttt ... gttcatgtagTTCATTCATGCATTTGACAAGAGAAACCTGTGGCACAAGGTGCCTGTTCCG
EST: gi|29622413|gb|CB627424.1|CB627424
EST:     TCCGTGATGTTTTCTCTAAGATGTCTTTCTTTGACAAGATTGGCTTTCTA                         TTCATTCATGCATTTGACAAGAGAAACCTGTGGCACAAGGTGCCTGTTCCG
genomic: TCCGTGATGTTTTCTCTAAGATGTCTTTCTTTGACAAGATTGGCTTTCTAgtacgttttt ... gttcatgtagTTCATTCATGCATTTGACAAGAGAAACCTGTGGCACAAGGTGCCTGTTCCG
EST: gi|88367577|gb|CI568349.1|CI568349
EST:     TCCGTGATGTTTTCTCTAAGATGTCTTTCTTTGACAAGATTGGCTTTCTA                         TTCATTCATGCATTTGACAAGAGAAACCTGTGGCACAAGGTGCCTGTTCCG
genomic: TCCGTGATGTTTTCTCTAAGATGTCTTTCTTTGACAAGATTGGCTTTCTAgtacgttttt ... gttcatgtagTTCATTCATGCATTTGACAAGAGAAACCTGTGGCACAAGGTGCCTGTTCCG
EST: gi|29674051|gb|CB670326.1|CB670326
EST:     TCCGTGATGTTTTCTCTAAGATGTCTTTCTTTGACAAGATTGGCTTTCTA                         TTCATTCATGCATTTGACAAGAGAAACCTGTGGCACAAGGTGCCTGTTCCG
genomic: TCCGTGATGTTTTCTCTAAGATGTCTTTCTTTGACAAGATTGGCTTTCTAgtacgttttt ... gttcatgtagTTCATTCATGCATTTGACAAGAGAAACCTGTGGCACAAGGTGCCTGTTCCG
EST: gi|29622490|gb|CB627501.1|CB627501
EST:     TCCGTGATGTTTTCTCTAAGATGTCTTTCTTTGACAAGATTGGCTTTCTA                         TTCATTCATGCATTTGACAAGAGAAACCTGTGGCACAAGGTGCCTGTTCCG
genomic: TCCGTGATGTTTTCTCTAAGATGTCTTTCTTTGACAAGATTGGCTTTCTAgtacgttttt ... gttcatgtagTTCATTCATGCATTTGACAAGAGAAACCTGTGGCACAAGGTGCCTGTTCCG
EST: gi|88327757|gb|CI657801.1|CI657801
EST:     TCCGTGATGTTTTCTCTAAGATGTCTTTCTTTGACAAGATTGGCTTTCTA                         TTCATTCATGCATTTGACAAGAGAAACCTGTGGCACAAGGTGCCTGTTCCG
genomic: TCCGTGATGTTTTCTCTAAGATGTCTTTCTTTGACAAGATTGGCTTTCTAgtacgttttt ... gttcatgtagTTCATTCATGCATTTGACAAGAGAAACCTGTGGCACAAGGTGCCTGTTCCG
EST: gi|88342941|gb|CI640274.1|CI640274
EST:     TCCGTGATGTTTTCTCTAAGATGTCTTTCTTTGACAAGATTGGCTTTCTA                         TTCATTCATGCATTTGACAAGAGAAACCTGTGGCACAAGGTGCCTGTTCCG
genomic: TCCGTGATGTTTTCTCTAAGATGTCTTTCTTTGACAAGATTGGCTTTCTAgtacgttttt ... gttcatgtagTTCATTCATGCATTTGACAAGAGAAACCTGTGGCACAAGGTGCCTGTTCCG
EST: gi|88349484|gb|CI653763.1|CI653763
EST:     TCCGTGATGTTTTCTCTAAGATGTCTTTCTTTGACAAGATTGGCTTTCTA                         TTCATTCATGCATTTGACAAGAGAAACCTGTGGCACAAGGTGCCTGTTCCG
genomic: TCCGTGATGTTTTCTCTAAGATGTCTTTCTTTGACAAGATTGGCTTTCTAgtacgttttt ... gttcatgtagTTCATTCATGCATTTGACAAGAGAAACCTGTGGCACAAGGTGCCTGTTCCG
EST: gi|88571735|gb|CI663108.1|CI663108
EST:     TCCGTGATGTTTTCTCTAAGATGTCTTTCTTTGACAAGATTGGCTTTCTA                         TTCATTCATGCATTTGACAAGAGAAACCTGTGGCACAAGGTGCCTGTTCCG
genomic: TCCGTGATGTTTTCTCTAAGATGTCTTTCTTTGACAAGATTGGCTTTCTAgtacgttttt ... gttcatgtagTTCATTCATGCATTTGACAAGAGAAACCTGTGGCACAAGGTGCCTGTTCCG
EST: gi|29625519|gb|CB630530.1|CB630530
EST:     TCCGTGATGTTTTCTCTAAGATGTCTTTCTTTGACAAGATTGGCTTTCTA                         TTCATTCATGCATTTGACAAGAGAAACCTGTGGCACAAGGTGCCTGTTCCG
genomic: TCCGTGATGTTTTCTCTAAGATGTCTTTCTTTGACAAGATTGGCTTTCTAgtacgttttt ... gttcatgtagTTCATTCATGCATTTGACAAGAGAAACCTGTGGCACAAGGTGCCTGTTCCG
EST: gi|88325711|gb|CI648155.1|CI648155
EST:     TCCGTGATGTTTTCTCTAAGATGTCTTTCTTTGACAAGATTGGCTTTCTA                         TTCATTCATGCATTTGACAAGAGAAACCTGTGGCACAAGGTGCCTGTTCCG
genomic: TCCGTGATGTTTTCTCTAAGATGTCTTTCTTTGACAAGATTGGCTTTCTAgtacgttttt ... gttcatgtagTTCATTCATGCATTTGACAAGAGAAACCTGTGGCACAAGGTGCCTGTTCCG
EST: gi|33675485|gb|CF303724.1|CF303724
EST:     TCCGTGATGTTTTCTCTAAGATGTCTTTCTTTGACAAGATTGGCTTTCTA                         TTCATTCATGCATTTGACAAGAGAAACC
genomic: TCCGTGATGTTTTCTCTAAGATGTCTTTCTTTGACAAGATTGGCTTTCTAgtacgttttt ... gttcatgtagTTCATTCATGCATTTGACAAGAGAAACC
EST: gi|29625911|gb|CB630922.1|CB630922
EST:     TCCGTGATGTTTTCTCTAAGATGTCTTTCTTTGACAAGATTGGCTTTCTA                         TTCATTCATGCATTTGACAAGAGAAACCTGTGGCACAAGGTGCCTGTTCCG
genomic: TCCGTGATGTTTTCTCTAAGATGTCTTTCTTTGACAAGATTGGCTTTCTAgtacgttttt ... gttcatgtagTTCATTCATGCATTTGACAAGAGAAACCTGTGGCACAAGGTGCCTGTTCCG
EST: gi|29625830|gb|CB630841.1|CB630841
EST:     TCCGTGATGTTTTCTCTAAGATGTCTTTCTTTGACAAGATTGGCTTTCTA                         TTCATTCATGCATTTGACAAGAGAAACCTGTGGCACAAGGTGCCTGTTCCG
genomic: TCCGTGATGTTTTCTCTAAGATGTCTTTCTTTGACAAGATTGGCTTTCTAgtacgttttt ... gttcatgtagTTCATTCATGCATTTGACAAGAGAAACCTGTGGCACAAGGTGCCTGTTCCG
EST: gi|88337257|gb|CI629547.1|CI629547
EST:     TCCGTGATGTTTTCTCTAAGATGTCTTTCTTTGACAAGATTGGCTTTCTA                         TTCATTCATGCATTTGACAAGAGAAACCTGTGGCACAAGGTGCCTGTTCCG
genomic: TCCGTGATGTTTTCTCTAAGATGTCTTTCTTTGACAAGATTGGCTTTCTAgtacgttttt ... gttcatgtagTTCATTCATGCATTTGACAAGAGAAACCTGTGGCACAAGGTGCCTGTTCCG
EST: gi|29626293|gb|CB631304.1|CB631304
EST:     TCCGTGATGTTTTCTCTAAGATGTCTTTCTTTGACAAGATTGGCTTTCTA                         TTCATTCATGCATTTGACAAGAGAAACCTGTGGCACAAGGTGCCTGTTCCG
genomic: TCCGTGATGTTTTCTCTAAGATGTCTTTCTTTGACAAGATTGGCTTTCTAgtacgttttt ... gttcatgtagTTCATTCATGCATTTGACAAGAGAAACCTGTGGCACAAGGTGCCTGTTCCG
EST: gi|29679634|gb|CB675909.1|CB675909
EST:     TCCGTGATGTTTTCTCTAAGATGTCTTTCTTTGACAAGATTGGCTTTCTA                         TTCATTCATGCATTTGACAAGAGAAACCTGTGGCACAAGGTGCCTGTTCCG
genomic: TCCGTGATGTTTTCTCTAAGATGTCTTTCTTTGACAAGATTGGCTTTCTAgtacgttttt ... gttcatgtagTTCATTCATGCATTTGACAAGAGAAACCTGTGGCACAAGGTGCCTGTTCCG
EST: gi|29623589|gb|CB628600.1|CB628600
EST:     TCCGTGATGTTTTCTCTAAGATGTCTTTCTTTGACAAGATTGGCTTTCTA                         TTCATTCATGCATTTGACAAGAGAAACCTGTGGCACAAGGTGCCTGTTCCG
genomic: TCCGTGATGTTTTCTCTAAGATGTCTTTCTTTGACAAGATTGGCTTTCTAgtacgttttt ... gttcatgtagTTCATTCATGCATTTGACAAGAGAAACCTGTGGCACAAGGTGCCTGTTCCG
EST: gi|33675576|gb|CF303815.1|CF303815
EST:     TCCGTGATGTTTTCTCTAAGATGTCTTTCTTTGACAAGATTGGCTTTCTA                         TTCATTCATGCATTTGACAAGAGAAACCTGTGGCACAAGGTGCCTGTTCCG
genomic: TCCGTGATGTTTTCTCTAAGATGTCTTTCTTTGACAAGATTGGCTTTCTAgtacgttttt ... gttcatgtagTTCATTCATGCATTTGACAAGAGAAACCTGTGGCACAAGGTGCCTGTTCCG
EST: gi|88347126|gb|CI631206.1|CI631206
EST:     TCCGTGATGTTTTCTCTAAGATGTCTTTCTTTGACAAGATTGGCTTTCTA                         TTCATTCATGCATTTGACAAGAGAAACCTGTGGCACAAGGTGCCTGTTCCG
genomic: TCCGTGATGTTTTCTCTAAGATGTCTTTCTTTGACAAGATTGGCTTTCTAgtacgttttt ... gttcatgtagTTCATTCATGCATTTGACAAGAGAAACCTGTGGCACAAGGTGCCTGTTCCG
EST: gi|88347940|gb|CI636033.1|CI636033
EST:     TCCGTGATGTTTTCTCTAAGATGTCTTTCTTTGACAAGATTGGCTTTCTA                         TTCATTCATGCATTTGACAAGAGAAACCTGTGGCACAAGGTGCCTGTTCCG
genomic: TCCGTGATGTTTTCTCTAAGATGTCTTTCTTTGACAAGATTGGCTTTCTAgtacgttttt ... gttcatgtagTTCATTCATGCATTTGACAAGAGAAACCTGTGGCACAAGGTGCCTGTTCCG
EST: gi|88303028|gb|CI668874.1|CI668874
EST:     TCCGTGATGTTTTCTCTAAGATGTCTTTCTTTGACAAGATTGGCTTTCTA                         TTCATTCATGCATTTGACAAGAGAAACCTGTGGCACAAGGTGCCTGTTCCG
genomic: TCCGTGATGTTTTCTCTAAGATGTCTTTCTTTGACAAGATTGGCTTTCTAgtacgttttt ... gttcatgtagTTCATTCATGCATTTGACAAGAGAAACCTGTGGCACAAGGTGCCTGTTCCG
EST: gi|29627804|gb|CB632815.1|CB632815
EST:     TCCGTGATGTTTTCTCTAAGATGTCTTTCTTTGACAAGATTGGCTTTCTA                         TTCATTCATGCATTTGACAAGAGAAACCTGTGGCACAAGGTGCCTGTTCCG
genomic: TCCGTGATGTTTTCTCTAAGATGTCTTTCTTTGACAAGATTGGCTTTCTAgtacgttttt ... gttcatgtagTTCATTCATGCATTTGACAAGAGAAACCTGTGGCACAAGGTGCCTGTTCCG
EST: gi|88406617|gb|CI599110.1|CI599110
EST:     TCCGTGATGTTTTCTCTAAGATGTCTTTCTTTGACAAGATTGGCTTTCTA                         TTCATTCATGCATTTGACAAGAGAAACCTGTGGCACAAGGTGCCTGTTCCG
genomic: TCCGTGATGTTTTCTCTAAGATGTCTTTCTTTGACAAGATTGGCTTTCTAgtacgttttt ... gttcatgtagTTCATTCATGCATTTGACAAGAGAAACCTGTGGCACAAGGTGCCTGTTCCG
EST: gi|88385226|gb|CI630327.1|CI630327
EST:     TCCGTGATGTTTTCTCTAAGATGTCTTTCTTCGACAAGATTGGCTTTCTA                         TTCATTCATGCATTTGACAAGAGAAACCTGTGGCACAAGGTGCCTGTTCCG
genomic: TCCGTGATGTTTTCTCTAAGATGTCTTTCTTTGACAAGATTGGCTTTCTAgtacgttttt ... gttcatgtagTTCATTCATGCATTTGACAAGAGAAACCTGTGGCACAAGGTGCCTGTTCCG
EST: gi|29626125|gb|CB631136.1|CB631136
EST:     TCCGTGATGTTTTCTCTAAGATGTCTTTCTTTGACAAGATTGGCTTTCTA                         TTCATTCATGCATTTGACAAGAGAAACCTGTGGCACAAGGTGCCTGTTCCG
genomic: TCCGTGATGTTTTCTCTAAGATGTCTTTCTTTGACAAGATTGGCTTTCTAgtacgttttt ... gttcatgtagTTCATTCATGCATTTGACAAGAGAAACCTGTGGCACAAGGTGCCTGTTCCG
EST: gi|88338511|gb|CI645765.1|CI645765
EST:     TCCGTGATGTTTTCTCTAAGATGTCTTTCTTTGACAAGATTGGCTTTCTA                         TTCATTCATGCATTTGACAAGAGAAACCTGTGGCACAAGGTGCCTGTTCCG
genomic: TCCGTGATGTTTTCTCTAAGATGTCTTTCTTTGACAAGATTGGCTTTCTAgtacgttttt ... gttcatgtagTTCATTCATGCATTTGACAAGAGAAACCTGTGGCACAAGGTGCCTGTTCCG
EST: gi|29628820|gb|CB633831.1|CB633831
EST:     TCCGTGATGTTTTCTCTAAGATGTCTTTCTTTGACAAGATTGGCTTTCTA                         TTCATTCATGCATTTGACAAGAGAAACCTGTGGCACAAGGTGCCTGTTCCG
genomic: TCCGTGATGTTTTCTCTAAGATGTCTTTCTTTGACAAGATTGGCTTTCTAgtacgttttt ... gttcatgtagTTCATTCATGCATTTGACAAGAGAAACCTGTGGCACAAGGTGCCTGTTCCG
EST: gi|29624043|gb|CB629054.1|CB629054
EST:     TCCGTGATGTTTTCTCTAAGATGTCTTTCTTTGACAAGATTGGCTTTCTA                         TTCATTCATGCATTTGACAAGAGAAACCTGTGGCACAAGGTGCCTGTTCCG
genomic: TCCGTGATGTTTTCTCTAAGATGTCTTTCTTTGACAAGATTGGCTTTCTAgtacgttttt ... gttcatgtagTTCATTCATGCATTTGACAAGAGAAACCTGTGGCACAAGGTGCCTGTTCCG
EST: gi|29627901|gb|CB632912.1|CB632912
EST:     TCCGTGATGTTTTCTCTAAGATGTCTTTCTTTGACAAGATTGGCTTTCTA                         TTCATTCATGCATTTGACAAGAGAAACCTGTGGCACAAGGTGCCTGTTCCG
genomic: TCCGTGATGTTTTCTCTAAGATGTCTTTCTTTGACAAGATTGGCTTTCTAgtacgttttt ... gttcatgtagTTCATTCATGCATTTGACAAGAGAAACCTGTGGCACAAGGTGCCTGTTCCG
EST: gi|33675586|gb|CF303825.1|CF303825
EST:     TCCGTGATGTTTTCTCTAAGATGTCTTTCTTTGACAAGATTGGCTTTCTA                         TTCATTCATGCATTTGACAAGAGAAACCTGTGGCACAAGGTGCCTGTTCCG
genomic: TCCGTGATGTTTTCTCTAAGATGTCTTTCTTTGACAAGATTGGCTTTCTAgtacgttttt ... gttcatgtagTTCATTCATGCATTTGACAAGAGAAACCTGTGGCACAAGGTGCCTGTTCCG
EST: gi|88305364|gb|CI630526.1|CI630526
EST:     TCCGTGATGTTTTCTCTAAGATGTCTTTCTTTGACAAGATTGGCTTTCTA                         TTCATTCATGCATTTGACAAGAGAAACCTGTGGCACAAGGTGCCTGTTCCG
genomic: TCCGTGATGTTTTCTCTAAGATGTCTTTCTTTGACAAGATTGGCTTTCTAgtacgttttt ... gttcatgtagTTCATTCATGCATTTGACAAGAGAAACCTGTGGCACAAGGTGCCTGTTCCG
EST: gi|29628685|gb|CB633696.1|CB633696
EST:     CCGTGATGTTTTCTCTAAGATGTCTTTCTTTGACAAGATTGGACTTTCTA                         TTCATTCATGCATTTGACAAGAGAAACCTGTGGCACAAGGTGCCTGTTCC
genomic: CCGTGATGTTTTCTCTAAGATGTCTTTCTTTGACAAGATTGG-CTTTCTAgtacgttttt ... gttcatgtagTTCATTCATGCATTTGACAAGAGAAACCTGTGGCACAAGGTGCCTGTTCC
EST: gi|29628226|gb|CB633237.1|CB633237
EST:     TCCGTGATGTTTTCTCTAAGATGTCTTTCTTTGACAAGATTGGCTTTCTA                         TTCATTCATGCATTTGACAAGAGAAACCTGTGGCACAAGGTGCCTGTTCCG
genomic: TCCGTGATGTTTTCTCTAAGATGTCTTTCTTTGACAAGATTGGCTTTCTAgtacgttttt ... gttcatgtagTTCATTCATGCATTTGACAAGAGAAACCTGTGGCACAAGGTGCCTGTTCCG
EST: gi|29625787|gb|CB630798.1|CB630798
EST:     TCCGTGATGTTTTCTCTAAGATGTCTTTCTTTGACAAGATTGGCTTTCTA                         TTCATTCATGCATTTGACAAGAGAAACCTGTGGCACAAGGTGCCTGTTCCG
genomic: TCCGTGATGTTTTCTCTAAGATGTCTTTCTTTGACAAGATTGGCTTTCTAgtacgttttt ... gttcatgtagTTCATTCATGCATTTGACAAGAGAAACCTGTGGCACAAGGTGCCTGTTCCG
EST: gi|29627802|gb|CB632813.1|CB632813
EST:     TCCGTGATGTTTTCTCTAAGATGTCTTTCTTTGACAAGATTGGCTTTCTA                         TTCATTCATGCATTTGACAAGAGAAACCTGTGGCACAAGGTGCCTGTTCCG
genomic: TCCGTGATGTTTTCTCTAAGATGTCTTTCTTTGACAAGATTGGCTTTCTAgtacgttttt ... gttcatgtagTTCATTCATGCATTTGACAAGAGAAACCTGTGGCACAAGGTGCCTGTTCCG
EST: gi|29623658|gb|CB628669.1|CB628669
EST:     TCCGTGATGTTTTCTCTAAGATGTCTTTCTTTGACAAGATTGGCTTTCTA                         TTCATTCATGCATTTGACAAGAGAAACCTGTGGCACAAGGTGCCTGTTCCG
genomic: TCCGTGATGTTTTCTCTAAGATGTCTTTCTTTGACAAGATTGGCTTTCTAgtacgttttt ... gttcatgtagTTCATTCATGCATTTGACAAGAGAAACCTGTGGCACAAGGTGCCTGTTCCG
EST: gi|88339870|gb|CI649127.1|CI649127
EST:     TCCGTGATGTTTTCTCTAAGATGTCTTTCTTTGACAAGATTGGCTTTCTA                         TTCATTCATGCATTTGACAAGAGAAACCTGTGGCACAAGGTGCCTGTTCCG
genomic: TCCGTGATGTTTTCTCTAAGATGTCTTTCTTTGACAAGATTGGCTTTCTAgtacgttttt ... gttcatgtagTTCATTCATGCATTTGACAAGAGAAACCTGTGGCACAAGGTGCCTGTTCCG
EST: gi|29627625|gb|CB632636.1|CB632636
EST:     TCCGTGATGTTTTCTCTAAGATGTCTTTCTTTGACAAGATTGGCTTTCTA                         TTCATTCATGCATTTGACAAGAGAAACCTGTGGCACAAGGTGCCTGTTCCG
genomic: TCCGTGATGTTTTCTCTAAGATGTCTTTCTTTGACAAGATTGGCTTTCTAgtacgttttt ... gttcatgtagTTCATTCATGCATTTGACAAGAGAAACCTGTGGCACAAGGTGCCTGTTCCG
EST: gi|29623848|gb|CB628859.1|CB628859
EST:     TCCGTGATGTTTTCTCTAAGATGTCTTTCTTTGACAAGATTGGCTTTCTA                         TTCATTCATGCATTTGACAAGAGAAACCTGTGGCACAAGGTGCCTGTTCCG
genomic: TCCGTGATGTTTTCTCTAAGATGTCTTTCTTTGACAAGATTGGCTTTCTAgtacgttttt ... gttcatgtagTTCATTCATGCATTTGACAAGAGAAACCTGTGGCACAAGGTGCCTGTTCCG
EST: gi|4968860|gb|AU065764.1|AU065764
EST:     TCCGTGATGTTTTCTCTAAGATGTCTTTCTTTGACAAGATTGGCTTTCTA                         TTCATTCATGCATTTGACAAGAGAAACCTGTGGCACAAGGTGCCTGTTCCG
genomic: TCCGTGATGTTTTCTCTAAGATGTCTTTCTTTGACAAGATTGGCTTTCTAgtacgttttt ... gttcatgtagTTCATTCATGCATTTGACAAGAGAAACCTGTGGCACAAGGTGCCTGTTCCG
EST: gi|29622060|gb|CB627071.1|CB627071
EST:     TCCGTGATGTTTTCTCTAAGATGTCTTTCTTTGACAAGATTGGCTTTCTA                         TTCATTCATGCATTTGACAAGAGAAACCTGTGGCACAAGGTGCCTGTTCCG
genomic: TCCGTGATGTTTTCTCTAAGATGTCTTTCTTTGACAAGATTGGCTTTCTAgtacgttttt ... gttcatgtagTTCATTCATGCATTTGACAAGAGAAACCTGTGGCACAAGGTGCCTGTTCCG
EST: gi|33675591|gb|CF303830.1|CF303830
EST:     TCCGTGATGTTTTCTCTAAGATGTCTTTCTTTGACAAGATTGGCTTTCTA                         TTCATTCATGCATTTGACAAGAGAAACCTGTGGCACAAGGTGCCTGTTCCG
genomic: TCCGTGATGTTTTCTCTAAGATGTCTTTCTTTGACAAGATTGGCTTTCTAgtacgttttt ... gttcatgtagTTCATTCATGCATTTGACAAGAGAAACCTGTGGCACAAGGTGCCTGTTCCG
EST: gi|88345083|gb|CI628337.1|CI628337
EST:     TCCGTGATGTTTTCTCTAAGATGTCTTTCTTTGACAAGATTGGCTTTCTA                         TTCATTCATGCATTTGACAAGAGAAACCTGTGGCACAAGGTGCCTGTTCCG
genomic: TCCGTGATGTTTTCTCTAAGATGTCTTTCTTTGACAAGATTGGCTTTCTAgtacgttttt ... gttcatgtagTTCATTCATGCATTTGACAAGAGAAACCTGTGGCACAAGGTGCCTGTTCCG
EST: gi|88430254|gb|CI567273.1|CI567273
EST:     TCCGTGATGTTTTCTCTAAGATGTCTTTCTTTGACAAGATTGGCTTTCTA                         TTCATTCATGCATTTGACAAGAGAAACCTGTGGCACAAGGTGCCTGTTCCG
genomic: TCCGTGATGTTTTCTCTAAGATGTCTTTCTTTGACAAGATTGGCTTTCTAgtacgttttt ... gttcatgtagTTCATTCATGCATTTGACAAGAGAAACCTGTGGCACAAGGTGCCTGTTCCG
EST: gi|33676870|gb|CF305109.1|CF305109
EST:     TCCGTGATGTTTTCTCTAAGATGTCTTTCTTTGACAAGATTGGCTTTCTA                         TTCATTCATGCATTTGACAAGAGAAACCTGTGGCACAAGGTGCCTGTTCCG
genomic: TCCGTGATGTTTTCTCTAAGATGTCTTTCTTTGACAAGATTGGCTTTCTAgtacgttttt ... gttcatgtagTTCATTCATGCATTTGACAAGAGAAACCTGTGGCACAAGGTGCCTGTTCCG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CCATGGGTTCAGGACTCTTCAAGCCTCGTGTTCATCCGGACCTCCGTGATGTTTTCTCTAAGATGTCTTTCTTTGACAAGATTGGCTTTCTAgtacgtttttaattaatttttaagagtaatttatatatcaagtatttatttgatgtacatactgcatacaatatacacatacatacctattccttaagaa

- - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGATG