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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCCCTTGGTAACCATTTGATGAGTAAGGGCTACAAATTGGTTACTGACGGAACAGAGAACCATCTTGTTCTCTGGGATCTGCGCCCTCTTGGCTTGACTGgtatgctgagcaagtttaatggcatcttatgttgttttctctgagtccatgtgaactaactcaaatgttggtctgccttaggtaacaaag

Basic information

species Oryza sativa
transcript LOC_Os12g22030.2
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58683023|gb|CK071710.1|CK071710
EST:     AACAGAGAACCATCTTGTTCTCTGGGATCTGCGCCCTCTTGGCTTGACTG                         G
genomic: AACAGAGAACCATCTTGTTCTCTGGGATCTGCGCCCTCTTGGCTTGACTGgtatgctgag ... ggtaacaaag-
EST: gi|58683023|gb|CK071710.1|CK071710
EST:     AACAGAGAACCATCTTGTTCTCTGGGATCTGCGCCCTCTTGGCTTGACTG                         G
genomic: AACAGAGAACCATCTTGTTCTCTGGGATCTGCGCCCTCTTGGCTTGACTGgtatgctgag ... ggtaacaaag-
EST: gi|87027893|gb|CI276249.1|CI276249
EST:     AACAGAGAACCATCTTGTTCTCTGGGATCTGCGCCCTCTTGGCTTGACTGGTAACTAAG                 
genomic: AACAGAGAACCATCTTGTTCTCTGGGATCTGCGCCCTCTTGGC-T---T-G--ACT--Ggtatgctgag ... gg
EST: gi|88731473|gb|CI755086.1|CI755086
EST:     AACAGAGAACCATCTTGTTCTCTGGGATCTGCGCCCTCTTGGCTTGACTGGTAACAAAG                 
genomic: AACAGAGAACCATCTTGTTCTCTGGGATCTGCGCCCTCTTGGCTTGAC---T------Ggtatgctgag ... gg
EST: gi|58589560|gb|CF987868.1|CF987868
EST:     AACAGAGAACCATCTTGTTCTCTGGGATCTGCGCCCTCTTGGCTTGACTG                         G
genomic: AACAGAGAACCATCTTGTTCTCTGGGATCTGCGCCCTCTTGGCTTGACTGgtatgctgag ... ggtaacaaag-
EST: gi|58589560|gb|CF987868.1|CF987868
EST:     AACAGAGAACCATCTTGTTCTCTGGGATCTGCGCCCTCTTGGCTTGACTG                         G
genomic: AACAGAGAACCATCTTGTTCTCTGGGATCTGCGCCCTCTTGGCTTGACTGgtatgctgag ... ggtaacaaag-
EST: gi|86520924|gb|CI161130.1|CI161130
EST:     CCATCTTGTTCTCTGGGATCTGCGCCCTCTTGGCTTGGCTGGTAACAAAG                         TTGAGAAGGTCTGTGATTTGTGCAGCATTACACTGAACCAAAATGCTGTC
genomic: CCATCTTGTTCTCTGGGATCTGCGCCCTCTTGGC-T---T-G--AC--TGgtatgctgag ... ggtaacaaagTTGAGAAGGTCTGTGATTTGTGCAGCATTACACTGAACAAAAATGCTGTC
EST: gi|29661231|gb|CB657506.1|CB657506
EST:     AACAGAGAACCATCTTGTTCTCTGGGATCTGCGCCCTCTTGGCTTGACTG                         G
genomic: AACAGAGAACCATCTTGTTCTCTGGGATCTGCGCCCTCTTGGCTTGACTGgtatgctgag ... ggtaacaaag-
EST: gi|29661231|gb|CB657506.1|CB657506
EST:     AACAGAGAACCATCTTGTTCTCTGGGATCTGCGCCCTCTTGGCTTGACTG                         G
genomic: AACAGAGAACCATCTTGTTCTCTGGGATCTGCGCCCTCTTGGCTTGACTGgtatgctgag ... ggtaacaaag-