1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
GAGAACATACCGTAGGCCAGACGACAAGTCCGGTGGACATGGAGTTGGATGGAGCCCAATCATTCCCTACAGCTTCAAAGTTCGTGATGGCTGGGAAGAGgtgaaaaactgaagctactgtcacaaattcagatttatagaacactgtcacaatctttccgatgcaaaattgatgctgttccaatttttcaatgtag
species | Oryza sativa |
transcript | LOC_Os12g08830.2 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: GGAGCCCAATCATTCCCTACAGCTTCAAAGTTCGTGATGGCTGGGAAGAG GTCCCGGTGTCGATTGCTGATCTTGGTGGCACCGAGATCGACCTGCGGTTTEST: gi|27547203|gb|CA765413.2|CA765413
genomic: GGAGCCCAATCATTCCCTACAGCTTCAAAGTTCGTGATGGCTGGGAAGAGgtgaaaaact ... ttcaatgtagGTCCCGGTGTCGATTGCTGATCTTGGTGGCACCGAGATCGACCTGCGGTTT
EST: GGAGCCCAATCATTCCCTACAGCTTCAAAGTTCGTGATGGCTGGGAAGAG GTCCCGGTGTCGATTGCTGATCTTGGTGGCACCGAGATCGACCTGCGGTTTEST: gi|33664741|gb|CF295708.1|CF295708
genomic: GGAGCCCAATCATTCCCTACAGCTTCAAAGTTCGTGATGGCTGGGAAGAGgtgaaaaact ... ttcaatgtagGTCCCGGTGTCGATTGCTGATCTTGGTGGCACCGAGATCGACCTGCGGTTT
EST: GGAGCCCAATCATTCCCTACAGCTTCAAAGTTCGTGATGGCTGGGAAGAG GTCCCGGTGTCGATTGCTGATCTTGEST: gi|58607456|gb|CK035489.1|CK035489
genomic: GGAGCCCAATCATTCCCTACAGCTTCAAAGTTCGTGATGGCTGGGAAGAGgtgaaaaact ... ttcaatgtagGTCCCGGTGTCGATTGCTGATCTTG
EST: GGAGCCCAATCATTCCCTACAGCTTCAAAGTTCGTGATGGCTGGGAAGAG GTCCCGGTGTCGATTGCTGATCTTGGTGGCACCGAGATCGACCTGCGGTTTEST: gi|33673774|gb|CF302013.1|CF302013
genomic: GGAGCCCAATCATTCCCTACAGCTTCAAAGTTCGTGATGGCTGGGAAGAGgtgaaaaact ... ttcaatgtagGTCCCGGTGTCGATTGCTGATCTTGGTGGCACCGAGATCGACCTGCGGTTT
EST: GGAGCCCAATCATTCCCTACAGCTTCAAAGTTCGTGATGGCTGGGAAGAG GTCCCGGTGTCGATTGCTGATCTTGGTGGCACCGAGATCGACCTGCGGTTTEST: gi|14571429|gb|BI118797.1|BI118797
genomic: GGAGCCCAATCATTCCCTACAGCTTCAAAGTTCGTGATGGCTGGGAAGAGgtgaaaaact ... ttcaatgtagGTCCCGGTGTCGATTGCTGATCTTGGTGGCACCGAGATCGACCTGCGGTTT
EST: GGAGCCCAATCATTCCCTACAGCTTCAAAGTTCGTGATGGCTGGGAAGAG GTCCCGGTGTCGATTGCTGATCTTGGTGGCACCGAGATCGACCTGCGGTTTEST: gi|88839416|gb|CI005204.1|CI005204
genomic: GGAGCCCAATCATTCCCTACAGCTTCAAAGTTCGTGATGGCTGGGAAGAGgtgaaaaact ... ttcaatgtagGTCCCGGTGTCGATTGCTGATCTTGGTGGCACCGAGATCGACCTGCGGTTT
EST: GGAGCCCAATCATTCCCTACAGCTTCAAAGTTCGTGATGGCTGGGAAGAG GTCCCGGTGTCGATTGCTGATCTTGGTGGCACCGAGATCGACCTGCGGTTTEST: gi|88965272|gb|CI009308.1|CI009308
genomic: GGAGCCCAATCATTCCCTACAGCTTCAAAGTTCGTGATGGCTGGGAAGAGgtgaaaaact ... ttcaatgtagGTCCCGGTGTCGATTGCTGATCTTGGTGGCACCGAGATCGACCTGCGGTTT
EST: TTCCCTACAGCTTCAAAGTTCGTGATGGCTGGGAAGAG GTCCCGGTGTCGATTGCTGATCTTGGTGGCACCGAGATCGACCTGCGGTTT
genomic: TTCCCTACAGCTTCAAAGTTCGTGATGGCTGGGAAGAGgtgaaaaact ... ttcaatgtagGTCCCGGTGTCGATTGCTGATCTTGGTGGCACCGAGATCGACCTGCGGTTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAGAACATACCGTAGGCCAGACGACAAGTCCGGTGGACATGGAGTTGGATGGAGCCCAATCATTCCCTACAGCTTCAAAGTTCGTGATGGCTGGGAAGAGgtgaaaaactgaagctactgtcacaaattcagatttatagaacactgtcacaatctttccgatgcaaaattgatgctgttccaatttttcaatgtag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA