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GACGGTGTCGGAGGCGTGCAGGAGGATGGCGGCGAGGAGGGTCGACGCCGTGCTGCTCACCGACGCGCAGGGCCTCCTCTCCGGCATCGTCACTGATAAGgtacaggattttctttgcttgccccctcccaatctgttggaaatttggaatttctagtgtgcttttatagatgctgattttggaagatagaagatggttt...
species | Oryza sativa |
transcript | LOC_Os12g07190.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: TGCTGCTCACCGACGCGCAGGGCCTCCTCTCCGGCATCGTCACTGATAAG GATGTAGCTACAAGGGTGGTTGCTGAGGGGCTGCGGGTGGAGCAAACCATCEST: gi|29616351|gb|CB621363.1|CB621363
genomic: TGCTGCTCACCGACGCGCAGGGCCTCCTCTCCGGCATCGTCACTGATAAGgtacaggatt ... ccaatcgcagGATGTAGCTACAAGGGTGGTTGCTGAGGGGCTGCGGGTGGAGCAAACCATC
EST: TGCTGCTCACCGACGCGCAGGGCCTCCTCTCCGGCATCGTCACTGATAAG GATGTAGCTACAAGGGTGGTTGCTGAGGGGCTGCGGGTGGAGCAAACCATCEST: gi|58605735|gb|CK033768.1|CK033768
genomic: TGCTGCTCACCGACGCGCAGGGCCTCCTCTCCGGCATCGTCACTGATAAGgtacaggatt ... ccaatcgcagGATGTAGCTACAAGGGTGGTTGCTGAGGGGCTGCGGGTGGAGCAAACCATC
EST: TGCTGCTCACCGACGCGCAGGGCCTCCTCTCCGGCATCGTCACTGATAAG GATGTAGCTACAAGGGTGGTTGCTGAGGGGCTGCGGGTGGAGCAAACCATCEST: gi|29620736|gb|CB625747.1|CB625747
genomic: TGCTGCTCACCGACGCGCAGGGCCTCCTCTCCGGCATCGTCACTGATAAGgtacaggatt ... ccaatcgcagGATGTAGCTACAAGGGTGGTTGCTGAGGGGCTGCGGGTGGAGCAAACCATC
EST: TGCTGCTCACCGACGCGCAGGGCCTCCTCTCCGGCATCGTCACTGATAAG GATGTAGCTACAAGGGTGGTTGCTGAGGGGCTGCGGGTGGAGCAAACCATCEST: gi|38475232|gb|CF959365.1|CF959365
genomic: TGCTGCTCACCGACGCGCAGGGCCTCCTCTCCGGCATCGTCACTGATAAGgtacaggatt ... ccaatcgcagGATGTAGCTACAAGGGTGGTTGCTGAGGGGCTGCGGGTGGAGCAAACCATC
EST: TGCTGCTCACCGACGCGCAGGGCCTCCTCTCCGGCATCGTCACTGATAAG GATGTAGCTACAAGGGTGGTTGCTGAGGGGCTGCGGGTGGAGCAAACCATCEST: gi|58663826|gb|CK052512.1|CK052512
genomic: TGCTGCTCACCGACGCGCAGGGCCTCCTCTCCGGCATCGTCACTGATAAGgtacaggatt ... ccaatcgcagGATGTAGCTACAAGGGTGGTTGCTGAGGGGCTGCGGGTGGAGCAAACCATC
EST: TGCTGCTCACCGACGCGCAGGGCCTCCTCTCCGGCATCGTCACTGATAAG GATGTAGCTACAAGGGTGGTTGCTGAGGGGCTGCGGGTGGAGCAAACCATCEST: gi|29617498|gb|CB622510.1|CB622510
genomic: TGCTGCTCACCGACGCGCAGGGCCTCCTCTCCGGCATCGTCACTGATAAGgtacaggatt ... ccaatcgcagGATGTAGCTACAAGGGTGGTTGCTGAGGGGCTGCGGGTGGAGCAAACCATC
EST: TGCTGCTCACCGACGCGCAGGGCCTCCTCTCCGGCATCGTCACTGATAAG GATGTAGCTACAAGGGTGGTTGCTGAGGGGCTGCGGGTGGAGCAAACCATC
genomic: TGCTGCTCACCGACGCGCAGGGCCTCCTCTCCGGCATCGTCACTGATAAGgtacaggatt ... ccaatcgcagGATGTAGCTACAAGGGTGGTTGCTGAGGGGCTGCGGGTGGAGCAAACCATC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GACGGTGTCGGAGGCGTGCAGGAGGATGGCGGCGAGGAGGGTCGACGCCGTGCTGCTCACCGACGCGCAGGGCCTCCTCTCCGGCATCGTCACTGATAAGgtacaggattttctttgcttgccccctcccaatctgttggaaatttggaatttctagtgtgcttttatagatgctgattttggaagatagaagatggttt
- - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cccctcc