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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATATATAATCTCTGAAGAATCAAATGGCTGACGGCGAGGACATCCAGCCCCTTGTCTGCGACAATGGCACCGGCATGGTCAAGgtcatcatcatcatcaactcaatccaattaaccacctctcacaaatcacaacaacaacaacaaaccataccttatgttcttgcgttcaaaaaattcagtaaacaacaacaacagcaacgataaaccattgataataataatccaaaattcag

Basic information

species Oryza sativa
transcript LOC_Os12g06660.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|117251245|gb|CT844082.1|CT844082
EST:     GCGAGGACATCCAGCCCCTTGTCTGCGACAATGGCACCGGCATGGTCAAG                         GCCGGGTTCGCGGGCGACGACGCGCCGCGGGCGGTGTTCCCGAGCATCGTG
genomic: GCGAGGACATCCAGCCCCTTGTCTGCGACAATGGCACCGGCATGGTCAAGgtcatcatca ... caaaattcagGCCGGGTTCGCGGGCGACGACGCGCCGCGGGCGGTGTTCCCGAGCATCGTG
EST: gi|88345352|gb|CI656010.1|CI656010
EST:     GCGAGGACATCCAGCCCCTTGTCTGCGACAATGGCACCGGCATGGTCAAG                         GCCGGGTTCGCGGGCGACGACGCGCCGCGGGCGGTGTTCCCGAGCATCGTG
genomic: GCGAGGACATCCAGCCCCTTGTCTGCGACAATGGCACCGGCATGGTCAAGgtcatcatca ... caaaattcagGCCGGGTTCGCGGGCGACGACGCGCCGCGGGCGGTGTTCCCGAGCATCGTG
EST: gi|86890963|gb|CI305847.1|CI305847
EST:     GCGAGGACATCCAGCCCCTTGTCTGCGACAATGGCACCGGCATGGTCAAG                         GCCGGGTTCGCGGGCGACGACGCGCCGCGGGCGGTGTTCCCGAGCATCGTG
genomic: GCGAGGACATCCAGCCCCTTGTCTGCGACAATGGCACCGGCATGGTCAAGgtcatcatca ... caaaattcagGCCGGGTTCGCGGGCGACGACGCGCCGCGGGCGGTGTTCCCGAGCATCGTG
EST: gi|88576622|gb|CI670767.1|CI670767
EST:     GCGAGGACATCCAGCCCCTTGTCTGCGACAATGGCACCGGCATGGTCAAG                         GCCGGGTTCGCGGGCGACGACGCGCCGNGGGCGGTGTTCCCGAGCATCGTG
genomic: GCGAGGACATCCAGCCCCTTGTCTGCGACAATGGCACCGGCATGGTCAAGgtcatcatca ... caaaattcagGCCGGGTTCGCGGGCGACGACGCGCCGCGGGCGGTGTTCCCGAGCATCGTG
EST: gi|88340655|gb|CI647459.1|CI647459
EST:     GCGAGGACATCCAGCCCCTTGTCTGCGACAATGGCACCGGCATGGTCAAG                         GCCGGGTTCGCGGGCGACGACGCGCCGCGGGCGGTGTTCCCGAGCATCGTG
genomic: GCGAGGACATCCAGCCCCTTGTCTGCGACAATGGCACCGGCATGGTCAAGgtcatcatca ... caaaattcagGCCGGGTTCGCGGGCGACGACGCGCCGCGGGCGGTGTTCCCGAGCATCGTG