1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' |
TGCAGGGCTACAGTGCTGTACTCCCTGAGAAGTTGCAAACTGGAAAGTGGAATGTGTACAGgtaggttatttagtagtatatgttatactgcatttgcttatgtcatggctcaaaatttctgtttccatcttgcag
species | Oryza sativa |
transcript | LOC_Os12g04990.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: AGTGCTGTACTCCCTGAGAAGTGGCAAACTGGAAAGTGGAATGTGTACAG ATCCGCAAAGTCACCTCTTAAGTTAATAAATAGATTCCCTGATAACCCAGAEST: gi|58590036|gb|CF988344.1|CF988344
genomic: AGTGCTGTACTCCCTGAGAAGTTGCAAACTGGAAAGTGGAATGTGTACAGgtaggttatt ... catcttgcagATCCGCAAAGTCACCTCTTAAGTTAATAAATAGATTCCCTGATAACCCAGA
EST: AGTGCTGTACTCCCTGAGAAGTTGCAAACTGGAAAGTGGAATGTGTACAG ATCCGCGAAGTCACCTCTTAAGTTAATAAATAGATTCCCTGATAACCCAGAEST: gi|88569586|gb|CI660761.1|CI660761
genomic: AGTGCTGTACTCCCTGAGAAGTTGCAAACTGGAAAGTGGAATGTGTACAGgtaggttatt ... catcttgcagATCCGCAAAGTCACCTCTTAAGTTAATAAATAGATTCCCTGATAACCCAGA
EST: AGTGCTGTANTCCCTGAGAAGTTGCAAACTGGAAAGTGGAATGTGTACAG ATCCGCAAAGTCACCTCTTAAGTTAATAAATAGGTTNCCTGATAACCCACAEST: gi|29667939|gb|CB664214.1|CB664214
genomic: AGTGCTGTACTCCCTGAGAAGTTGCAAACTGGAAAGTGGAATGTGTACAGgtaggttatt ... catcttgcagATCCGCAAAGTCACCTCTTAAGTTAATAAATAGATTCCCTGATAACCCAGA
EST: AGTGCTGTACTCCCTGAGAAGTTGCAAACTGGAAAGTGGAATGTGTACAG ATCCGCAAAGTCACCTCTTAAGTTAATAAATAGATTCCCTGATAACCCAGAEST: gi|88294822|gb|CI604694.1|CI604694
genomic: AGTGCTGTACTCCCTGAGAAGTTGCAAACTGGAAAGTGGAATGTGTACAGgtaggttatt ... catcttgcagATCCGCAAAGTCACCTCTTAAGTTAATAAATAGATTCCCTGATAACCCAGA
EST: AGTGCTGTACTCCCTGAGAAGTTGCAAACTGGAAAGTGGAATGTGTACAG ATCCGCAAAGTCACCTCTTAAGTTAATAAATAGATTCCCTGATAACCCAGAEST: gi|87009029|gb|CI304972.1|CI304972
genomic: AGTGCTGTACTCCCTGAGAAGTTGCAAACTGGAAAGTGGAATGTGTACAGgtaggttatt ... catcttgcagATCCGCAAAGTCACCTCTTAAGTTAATAAATAGATTCCCTGATAACCCAGA
EST: AGTGCTGTACTCCCTGAGAAGTTGCAAACTGGAAAGTGGAATGTGTACAG ATCCGCAAAGTCACCTCTTAAGTTAATANATAGATTCCCTGATAACCCAGAEST: gi|88372758|gb|CI612686.1|CI612686
genomic: AGTGCTGTACTCCCTGAGAAGTTGCAAACTGGAAAGTGGAATGTGTACAGgtaggttatt ... catcttgcagATCCGCAAAGTCACCTCTTAAGTTAATAAATAGATTCCCTGATAACCCAGA
EST: AGTGCTGTACTCCCTGAGAAGTTGCAAACTGGAAAGTGGAATGTGTACAG ATCCGCAAAGTCACCTCTTAAGTTAATAAATAGATTCCCTGATAACCCAGAEST: gi|88288563|gb|CI663352.1|CI663352
genomic: AGTGCTGTACTCCCTGAGAAGTTGCAAACTGGAAAGTGGAATGTGTACAGgtaggttatt ... catcttgcagATCCGCAAAGTCACCTCTTAAGTTAATAAATAGATTCCCTGATAACCCAGA
EST: AGTGCTGTACTCCCTGAGAAGTTGCAAACTGGAAAGTGGAATGTGTACAG ATCCGCAAAGTCACCTCTTAAGTTAATAAATAGGTTCCCTGATAACCCAGAEST: gi|29626657|gb|CB631668.1|CB631668
genomic: AGTGCTGTACTCCCTGAGAAGTTGCAAACTGGAAAGTGGAATGTGTACAGgtaggttatt ... catcttgcagATCCGCAAAGTCACCTCTTAAGTTAATAAATAGATTCCCTGATAACCCAGA
EST: AGTGCTGTACTCCCTGAGAAGTTGCAAACTGGAAAGTGGAATGTGTACAG ATCCGCGAAGTCACCTCTTAAGGTAATAAATAGATTCCCTGATAACCCAGAEST: gi|29627108|gb|CB632119.1|CB632119
genomic: AGTGCTGTACTCCCTGAGAAGTTGCAAACTGGAAAGTGGAATGTGTACAGgtaggttatt ... catcttgcagATCCGCAAAGTCACCTCTTAAGTTAATAAATAGATTCCCTGATAACCCAGA
EST: AGTGCTGTACTCCCTGAGAAGTTGCAAACTGGAAAGTGGAATGTGTACAG ATCCGCGAAGTCACCTCTTAAGTTAATAAATAGATTCCCTGATAACCCAGAEST: gi|29630786|gb|CB635795.1|CB635795
genomic: AGTGCTGTACTCCCTGAGAAGTTGCAAACTGGAAAGTGGAATGTGTACAGgtaggttatt ... catcttgcagATCCGCAAAGTCACCTCTTAAGTTAATAAATAGATTCCCTGATAACCCAGA
EST: AGTGCTGTACTCCCTGAGAAGTTGCAAACTGGAAAGTGGAATGTGTACAG ATCCGCGAAGTCACCTCTTAAGTTAATAAATAGATTCCCTGATAACCCAGAEST: gi|29627343|gb|CB632354.1|CB632354
genomic: AGTGCTGTACTCCCTGAGAAGTTGCAAACTGGAAAGTGGAATGTGTACAGgtaggttatt ... catcttgcagATCCGCAAAGTCACCTCTTAAGTTAATAAATAGATTCCCTGATAACCCAGA
EST: AGTGCTGTACTCCCTGAGAAGTTGCAAACTGGAAAGTGGAATGTGTACAG ATCCGCGAAGTCACCTCTTAAGTTAATAAATAGATTCCCTGATAACCCAGAEST: gi|58605691|gb|CK033724.1|CK033724
genomic: AGTGCTGTACTCCCTGAGAAGTTGCAAACTGGAAAGTGGAATGTGTACAGgtaggttatt ... catcttgcagATCCGCAAAGTCACCTCTTAAGTTAATAAATAGATTCCCTGATAACCCAGA
EST: AGTGCTGTACTCCCTGAGAAGTTGCAAACTGGAAAGTGGAATGTGTACAG ATCCGCGAAGTCAGCTCTTAAGTTAATAAATAGATTCCCTGATAACCCAGAEST: gi|29674287|gb|CB670562.1|CB670562
genomic: AGTGCTGTACTCCCTGAGAAGTTGCAAACTGGAAAGTGGAATGTGTACAGgtaggttatt ... catcttgcagATCCGCAAAGTCACCTCTTAAGTTAATAAATAGATTCCCTGATAACCCAGA
EST: AGTGCTGTACTCCCTGAGAAGTTGCAAACTGGAAAGTGGAATGTGTACAG ATCCGCAAAGTCACCTCTTAAGTTAATAAATAGATTCCCTGATAACCCAGAEST: gi|88574980|gb|CI666749.1|CI666749
genomic: AGTGCTGTACTCCCTGAGAAGTTGCAAACTGGAAAGTGGAATGTGTACAGgtaggttatt ... catcttgcagATCCGCAAAGTCACCTCTTAAGTTAATAAATAGATTCCCTGATAACCCAGA
EST: AGTGCTGTACTCCCTGAGAAGTTGCAAACTGGAAAGTGGAATGTGTACAG ATCCGCAAAGTCACCTCTTAAGTTAATAAATAGATTCCCTGATAACCCAGAEST: gi|33801569|gb|CF326656.1|CF326656
genomic: AGTGCTGTACTCCCTGAGAAGTTGCAAACTGGAAAGTGGAATGTGTACAGgtaggttatt ... catcttgcagATCCGCAAAGTCACCTCTTAAGTTAATAAATAGATTCCCTGATAACCCAGA
EST: AGTGCTGTACTCCCTGAGAAGTTGCAAACTGGAAAGTGGAATGTGTACAG ATCCGCAAAGTCACCTCTTAAGTTAATAAATAGATTCCCTGATAACCCAGAEST: gi|117224882|gb|CT845959.1|CT845959
genomic: AGTGCTGTACTCCCTGAGAAGTTGCAAACTGGAAAGTGGAATGTGTACAGgtaggttatt ... catcttgcagATCCGCAAAGTCACCTCTTAAGTTAATAAATAGATTCCCTGATAACCCAGA
EST: AGTGCTGTACTCCCTGAGAAGTTGCAAACTGGAAAGTGGAATGTGTACAG ATCCGCGAAGTCACCTCTTAAGTTAATAAATAGATTCCCTGATAACCCAGAEST: gi|88356323|gb|CI652760.1|CI652760
genomic: AGTGCTGTACTCCCTGAGAAGTTGCAAACTGGAAAGTGGAATGTGTACAGgtaggttatt ... catcttgcagATCCGCAAAGTCACCTCTTAAGTTAATAAATAGATTCCCTGATAACCCAGA
EST: AGTGCTGTACTCCCTGAGAAGTTGCAAACTGGAAAGTGGAATGTGTACAG ATCCGCAAAGTCACCTCTTAAGTTAATAAATAGGTTCCCTGATAACCCAGAEST: gi|88307728|gb|CI644768.1|CI644768
genomic: AGTGCTGTACTCCCTGAGAAGTTGCAAACTGGAAAGTGGAATGTGTACAGgtaggttatt ... catcttgcagATCCGCAAAGTCACCTCTTAAGTTAATAAATAGATTCCCTGATAACCCAGA
EST: AGTGCTGTACTCCCTGAGAAGTTGCAAACTGGAAAGTGGAATGTGTACAG ATCCGCAAAGTCACCTCTTAAGTTAATAAATAGATTCCCTGATAACCCAGA
genomic: AGTGCTGTACTCCCTGAGAAGTTGCAAACTGGAAAGTGGAATGTGTACAGgtaggttatt ... catcttgcagATCCGCAAAGTCACCTCTTAAGTTAATAAATAGATTCCCTGATAACCCAGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGCAGGGCTACAGTGCTGTACTCCCTGAGAAGTTGCAAACTGGAAAGTGGAATGTGTACAGgtaggttatttagtagtatatgttatactgcatttgcttatgtcatggctcaaaatttctgtttccatcttgcag
- - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - AGTGGA