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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTCTGCCAATCTCTTCCTTGTTCCCCTTCCTGTACTTCATGgtaagtttagtttccatgcattccatctaatttcatgaaaaatatattttttacaaaaggtactcgatccattctcttctctagagcag

Basic information

species Oryza sativa
transcript LOC_Os12g03860.7
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os12g03860.2 (Oryza sativa), 5'ss of exon 2
lower sequence: GRMZM5G877788_T03 (Zea mays), 5'ss of exon 2
CTCTGCCAATCTCTTCCTTGTTCCCCTTCCTGTACTTCATGgtaagttta---gtttccatgc-----attccatctaatttcatgaaaa-----atatatttttt-------------acaaaaggtactcgatccattctctt-ctctagagcag-----------------
||||||||||| | ||| ||||||||||||| ||||||||||||||  |    || | | |||     ||||  |||  |    |||||       |  ||||| |              |||  |    ||  ||  || |||| |||   |                     
CTCTGCCAATCACGTCCCTGTTCCCCTTCCTCTACTTCATGgtaagcctgcctgtctgcctgcctgccattctttctgttgctctgaaatcatccgtgcattttctttctttttatttggcaagggactttccttctcttttctttctcctaatttatagtggtgaccaaacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|87008889|gb|CI304832.1|CI304832
EST:     CTCTGCCAATCTCTTCCTTGTTCCCCTTCCTGTACTTCATG                         ATAAGAGACTTGCATGTTGCTCGGACAGAGGAAGATATTGGATTCTATGCT
genomic: CTCTGCCAATCTCTTCCTTGTTCCCCTTCCTGTACTTCATGgtaagtttag ... tctagagcagATAAGAGACTTGCATGTTGCTCGGACAGAGGAAGATATTGGATTCTATGCT
EST: gi|33795182|gb|CF323464.1|CF323464
EST:     CTCTGCCAATCTCTTCCTTGTTCCCCTTCCTGTACTTCATG                         AGCAGATAAGAGACTTGCATGTTGCTCGGACAGAGGAAGATATTGGATTCT
genomic: CTCTGCCAATCTCTTCCTTGTTCCCCTTCCTGTACTTCATGgtaagtttag ... tctagagcagA-----TAAGAGACTTGCATGTTGCTCGGACAGAGGAAGATATTGGATTCT
EST: gi|88571513|gb|CI662886.1|CI662886
EST:     CTCTGCCAATCTCTTCCTTGTTCCCCTTCCTGTACTTCATG                         ATAAGAGACTTGCATGTTGCTCGGACAGAGGAAGATATTGGATTCTATGCT
genomic: CTCTGCCAATCTCTTCCTTGTTCCCCTTCCTGTACTTCATGgtaagtttag ... tctagagcagATAAGAGACTTGCATGTTGCTCGGACAGAGGAAGATATTGGATTCTATGCT
EST: gi|88372054|gb|CI641689.1|CI641689
EST:     CTCTGCCAATCTCTTCCTTGTTCCCCTTCCTGTACTTCATG                         ATAAGAGACTTGCATGTTGCTCGGACAGAGGAAGATATTGGATTCTATGCT
genomic: CTCTGCCAATCTCTTCCTTGTTCCCCTTCCTGTACTTCATGgtaagtttag ... tctagagcagATAAGAGACTTGCATGTTGCTCGGACAGAGGAAGATATTGGATTCTATGCT
EST: gi|88694564|gb|CI738602.1|CI738602
EST:     CTCTGCCAATCTCTTCCTTGTTCCCCTTCCTGTACTTCATG                         ATAAGAGACTTGCATGTCGCTCGGACAGAGGAAGATATCGGAT
genomic: CTCTGCCAATCTCTTCCTTGTTCCCCTTCCTGTACTTCATGgtaagtttag ... tctagagcagATAAGAGACTTGCATGTTGCTCGGACAGAGGAAGATATTGGAT
EST: gi|33677540|gb|CF305779.1|CF305779
EST:     CTCTGCCAATCTCTTCCTTGTTCCCCTTCCTGTACTTCATG                         ATAAGAGACTTGCATGTTGCTCGGACAGAGGAAGATATTGGATTCTATGCT
genomic: CTCTGCCAATCTCTTCCTTGTTCCCCTTCCTGTACTTCATGgtaagtttag ... tctagagcagATAAGAGACTTGCATGTTGCTCGGACAGAGGAAGATATTGGATTCTATGCT
EST: gi|88342532|gb|CI637108.1|CI637108
EST:     CTCTGCCAATCTCTTCCTTGTTCCCCTTCCTGTACTTCATG                         ATAAGAGACTTGCATGTTGCTCGGACAGAGGAAGATATTGGATTCTATGCT
genomic: CTCTGCCAATCTCTTCCTTGTTCCCCTTCCTGTACTTCATGgtaagtttag ... tctagagcagATAAGAGACTTGCATGTTGCTCGGACAGAGGAAGATATTGGATTCTATGCT