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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTCTGCCAATCTCTTCCTTGTTCCCCTTCCTGTACTTCATGgtaagtttagtttccatgcattccatctaatttcatgaaaaatatattttttacaaaaggtactcgatccattctcttctctag

Basic information

species Oryza sativa
transcript LOC_Os12g03860.3
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os12g03860.3 (Oryza sativa), 5'ss of exon 2
lower sequence: GRMZM5G877788_T03 (Zea mays), 5'ss of exon 2
CTCTGCCAATCTCTTCCTTGTTCCCCTTCCTGTACTTCATGgtaagttta---gtttccatgc-----attccatctaatttcatgaaaa-----atatatttt------ttacaaaaggtactcga--tccattctcttctctag----------------------------
||||||||||| | ||| ||||||||||||| ||||||||||||||  |    || | | |||     ||||  |||  |    |||||       |  |||||      ||  |   || |   ||  | | ||||||| |||                              
CTCTGCCAATCACGTCCCTGTTCCCCTTCCTCTACTTCATGgtaagcctgcctgtctgcctgcctgccattctttctgttgctctgaaatcatccgtgcattttctttctttttatttggcaagggactttccttctcttttctttctcctaatttatagtggtgaccaaacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33692622|gb|CF320861.1|CF320861
EST:     CTCTGCCAATCTCTTCCTTGTTCCCCTTCCTGTACTTCAT-                         ----GATAAGAGACTTGCATGTTGCTCGGACAGAGGAAGATATTGGATTCT
genomic: CTCTGCCAATCTCTTCCTTGTTCCCCTTCCTGTACTTCATGgtaagtttag ... tcttctctagAGCAGATAAGAGACTTGCATGTTGCTCGGACAGAGGAAGATATTGGATTCT
EST: gi|88571513|gb|CI662886.1|CI662886
EST:     CTCTGCCAATCTCTTCCTTGTTCCCCTTCCTGTACTTCATG                         A-----TAAGAGACTTGCATGTTGCTCGGACAGAGGAAGATATTGGATTCT
genomic: CTCTGCCAATCTCTTCCTTGTTCCCCTTCCTGTACTTCATGgtaagtttag ... tcttctctagAGCAGATAAGAGACTTGCATGTTGCTCGGACAGAGGAAGATATTGGATTCT
EST: gi|87008889|gb|CI304832.1|CI304832
EST:     CTCTGCCAATCTCTTCCTTGTTCCCCTTCCTGTACTTCATG                         A-----TAAGAGACTTGCATGTTGCTCGGACAGAGGAAGATATTGGATTCT
genomic: CTCTGCCAATCTCTTCCTTGTTCCCCTTCCTGTACTTCATGgtaagtttag ... tcttctctagAGCAGATAAGAGACTTGCATGTTGCTCGGACAGAGGAAGATATTGGATTCT
EST: gi|88342532|gb|CI637108.1|CI637108
EST:     CTCTGCCAATCTCTTCCTTGTTCCCCTTCCTGTACTTCATG                         A-----TAAGAGACTTGCATGTTGCTCGGACAGAGGAAGATATTGGATTCT
genomic: CTCTGCCAATCTCTTCCTTGTTCCCCTTCCTGTACTTCATGgtaagtttag ... tcttctctagAGCAGATAAGAGACTTGCATGTTGCTCGGACAGAGGAAGATATTGGATTCT
EST: gi|33677540|gb|CF305779.1|CF305779
EST:     CTCTGCCAATCTCTTCCTTGTTCCCCTTCCTGTACTTCAT-                         ----GATAAGAGACTTGCATGTTGCTCGGACAGAGGAAGATATTGGATTCT
genomic: CTCTGCCAATCTCTTCCTTGTTCCCCTTCCTGTACTTCATGgtaagtttag ... tcttctctagAGCAGATAAGAGACTTGCATGTTGCTCGGACAGAGGAAGATATTGGATTCT
EST: gi|88372054|gb|CI641689.1|CI641689
EST:     CTCTGCCAATCTCTTCCTTGTTCCCCTTCCTGTACTTCATG                         A-----TAAGAGACTTGCATGTTGCTCGGACAGAGGAAGATATTGGATTCT
genomic: CTCTGCCAATCTCTTCCTTGTTCCCCTTCCTGTACTTCATGgtaagtttag ... tcttctctagAGCAGATAAGAGACTTGCATGTTGCTCGGACAGAGGAAGATATTGGATTCT
EST: gi|33795182|gb|CF323464.1|CF323464
EST:     CTCTGCCAATCTCTTCCTTGTTCCCCTTCCTGTACTTCATG                         AGCAGATAAGAGACTTGCATGTTGCTCGGACAGAGGAAGATATTGGATTCT
genomic: CTCTGCCAATCTCTTCCTTGTTCCCCTTCCTGTACTTCATGgtaagtttag ... tcttctctagAGCAGATAAGAGACTTGCATGTTGCTCGGACAGAGGAAGATATTGGATTCT