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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTACACTTACACACGACCCAGACTGCGGTCCTCAAGGTTGATGCCTCACTGCAACATGCTCGACAGATCCCCGACACGCTATTTGGAATATTTTTTGAGgtaaaccgtaagatacatatagtaattttgttttgcacaattgcattatatcactttgtcctttcctctggcactttgttagcatgtctagaataagtcaggtagactacatgtttcactatgtcctgatggcaatttcttggctaatattgtag

Basic information

species Oryza sativa
transcript LOC_Os12g03470.5
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29627933|gb|CB632944.1|CB632944
EST:     GCTATTTGGAATATTTTTTGAG                         GAAATCAACCATGCAGGAGCTGGTGGAATATGGGCTGAACTTGTTAGTAAC
genomic: GCTATTTGGAATATTTTTTGAGgtaaaccgta ... aatattgtagGAAATCAACCATGCAGGAGCTGGTGGAATATGGGCTGAACTTGTTAGTAAC
EST: gi|29624170|gb|CB629181.1|CB629181
EST:     CGCAACATGCTCGACAGATCCCCGACACGCTATTTGGAATATTTTTTGAG                         GAAATCAACCATGCAGGAGCTGGTGGAATATGGGCTGAACTTGTTAGTAAC
genomic: TGCAACATGCTCGACAGATCCCCGACACGCTATTTGGAATATTTTTTGAGgtaaaccgta ... aatattgtagGAAATCAACCATGCAGGAGCTGGTGGAATATGGGCTGAACTTGTTAGTAAC
EST: gi|29624168|gb|CB629179.1|CB629179
EST:     CGCAACATGCTCGACAGATCCCCGACACGCTATTTGGAATATTTTTTGAG                         GAAATCAACCATGCAGGAGCTGGTGGAATATGGGCTGAACTTGTTAGTAAC
genomic: TGCAACATGCTCGACAGATCCCCGACACGCTATTTGGAATATTTTTTGAGgtaaaccgta ... aatattgtagGAAATCAACCATGCAGGAGCTGGTGGAATATGGGCTGAACTTGTTAGTAAC
EST: gi|29627193|gb|CB632204.1|CB632204
EST:     CGCAACATGCTCGACAGATCCCCGACACGCTATTTGGAATATTTTTTGAG                         GAAATCAACCATGCAGGAGCTGGTGGAATATGGGCTGAACTTGTTAGTAAC
genomic: TGCAACATGCTCGACAGATCCCCGACACGCTATTTGGAATATTTTTTGAGgtaaaccgta ... aatattgtagGAAATCAACCATGCAGGAGCTGGTGGAATATGGGCTGAACTTGTTAGTAAC
EST: gi|88327708|gb|CI657748.1|CI657748
EST:     TGCAACATGCTCGACAGATCCCCGACACGCTATTTGGAATATTTTTTGAG                         GAAATCAACCATGCAGGAGCTGGTGGAATATGGGCTGAACTTGTTAGTAAC
genomic: TGCAACATGCTCGACAGATCCCCGACACGCTATTTGGAATATTTTTTGAGgtaaaccgta ... aatattgtagGAAATCAACCATGCAGGAGCTGGTGGAATATGGGCTGAACTTGTTAGTAAC
EST: gi|29667031|gb|CB663306.1|CB663306
EST:     TGCAACATGCTCGACAGATCCCCGACACGCTATTTGGAATATTTTTTGAG                         GAAATCAACCATGCAGGAGCTGGTGGAATATGGGCTGAACTTGTTAGTAAC
genomic: TGCAACATGCTCGACAGATCCCCGACACGCTATTTGGAATATTTTTTGAGgtaaaccgta ... aatattgtagGAAATCAACCATGCAGGAGCTGGTGGAATATGGGCTGAACTTGTTAGTAAC