1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
ATAGCGGACGTTGCTCTCCTCGCATTTGGTACTAGCTTCCCTCAAATTTCACTAGCAACGATTGACGCAATCCGAAATCTGGGTCAGCTGACAGCAGGAGgtatactttgatcacctcatgcaaatgtttgttccaaagcatccgcaattgtatctaattcggtttcttgtgatttgcag
species | Oryza sativa |
transcript | LOC_Os11g43860.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: ACTAGCAACGATTGACGCAATCCGAAATCTGGGTCAGCTGACAGCAGGAG GTTTAGGTCCAGGTACCCTTGTGGGTTCTGCTGCATTTGATCTGTTCCCCAEST: gi|58687350|gb|CK076037.1|CK076037
genomic: ACTAGCAACGATTGACGCAATCCGAAATCTGGGTCAGCTGACAGCAGGAGgtatactttg ... tgatttgcagGTTTAGGTCCAGGTACCCTTGTGGGTTCTGCTGCATTTGATCTGTTCCCCA
EST: ACTAGCAACGATTGACGCAATCCGAAATCTGGGTCAGCTGACAGCAGGAG GTTTAGGTCCAGGTACCCTTGTGGGTTCTGCTGCATTTGATCTGTTCCCCAEST: gi|58591783|gb|CF990091.1|CF990091
genomic: ACTAGCAACGATTGACGCAATCCGAAATCTGGGTCAGCTGACAGCAGGAGgtatactttg ... tgatttgcagGTTTAGGTCCAGGTACCCTTGTGGGTTCTGCTGCATTTGATCTGTTCCCCA
EST: ACTAGCAACGATTGACGCAATCCGAAATCTGGGTCAGCTGACAGCAGGAG GTTTAGGTCCAGGTACCCTTGTGGGTTCTGCTGCATTTGATCTGTTCCCCA
genomic: ACTAGCAACGATTGACGCAATCCGAAATCTGGGTCAGCTGACAGCAGGAGgtatactttg ... tgatttgcagGTTTAGGTCCAGGTACCCTTGTGGGTTCTGCTGCATTTGATCTGTTCCCCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATAGCGGACGTTGCTCTCCTCGCATTTGGTACTAGCTTCCCTCAAATTTCACTAGCAACGATTGACGCAATCCGAAATCTGGGTCAGCTGACAGCAGGAGgtatactttgatcacctcatgcaaatgtttgttccaaagcatccgcaattgtatctaattcggtttcttgtgatttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA