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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGGTCGGCATTGAAATCAGTCAAACTGGAGGAGGATATGCCACATGAAGGAGAAACAACTTCTACAATTTTTGCATCCCTCCTTGATTCTGCAATCCAAGgttggtacaagcaatttagtttggatagcaagcgtcttatgaactgttctgtatctattttggcataggcagcctttacttgtgtgtttttctttgatgt...

Basic information

species Oryza sativa
transcript LOC_Os11g42420.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os11g42420.1 (Oryza sativa), 5'ss of exon 2
lower sequence: GRMZM2G348675_T02 (Zea mays), 5'ss of exon 2
CGGTCGGCATTGAAATCAGTCAAACTGGAGGAGGATATG------CCACATGAAGGAGAAACAACTTCTACAATTTTTGCATCCCTCCTTGATTCTGCAATCCAAGgttggtacaagcaatttagtttggatagcaagcgtcttatgaactgttctgtatctattttggcataggcagcctttacttgtgtgtttt--tctttgatgt--
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------ACGCTGAAGCCAGTCAAACTGGAGGACGATATGTATGTGCCACATGAAGGAGAAACGCCTTCTACAATGTTTGCAACTCTCCTTGATTCTGGGATCCAAGgttag-aggattaaagtggtctggttattgagctgcttgtag---gagtagtagttactatggcatgtgctattgttttctctctctccaaatttttgggatgg
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29622702|gb|CB627713.1|CB627713
EST:     AGAAACAACTTCTACAATTTTTGCATCCCTCCTTGATTCTGCAATCCAAG                         GATTGATGCCCTTCTCGGATGTGATTTTACAATTTGAGAGGACATGTCGAA
genomic: AGAAACAACTTCTACAATTTTTGCATCCCTCCTTGATTCTGCAATCCAAGgttggtacaa ... cttcttgcagGATTGATGCCCTTCTCGGATGTGATTTTACAATTTGAGAGGACATGTCGAA