1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
GGCCCTGCACTGGGCGGCGGTGCGTGGAGCCATAGCTGCGGCGGACGTGTTGCTGGAGAACGGTGCGAGGGTCGAGGCGGCCGATGTGAATGGCTACCGGgtaatgcagtcgttttgttgctctgaaaactctaggtggtcttaggagatcagttgggagattagaatgtaggatgtttgttgattttagactttagatt...
species | Oryza sativa |
transcript | LOC_Os11g34860.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: TGCTGGAGAACGGTGCGAGGGTCGAGGCGGCCGATGTGAATGGCTACCGG GCAGTTCATGTTGCAGCTCAGTATGGACAAACAGCATTCTTGCACCACATTEST: gi|29658090|gb|CB654365.1|CB654365
genomic: TGCTGGAGAACGGTGCGAGGGTCGAGGCGGCCGATGTGAATGGCTACCGGgtaatgcagt ... attatgtcagGCAGTTCATGTTGCAGCTCAGTATGGACAAACAGCATTCTTGCACCACATT
EST: TGCTGGAGAACGGTGCGAGGGTCGAGGCGGCCGATGTGAATGGCTACCGG GCAGTTCATGTTGCAGCTCAGTATGGACAAACAGCATTCTTGCACCACATTEST: gi|58668755|gb|CK057441.1|CK057441
genomic: TGCTGGAGAACGGTGCGAGGGTCGAGGCGGCCGATGTGAATGGCTACCGGgtaatgcagt ... attatgtcagGCAGTTCATGTTGCAGCTCAGTATGGACAAACAGCATTCTTGCACCACATT
EST: TGCTGGAGAACGGTGCGAGGGTCGAGGCGGCCGATGTGAATGGCTACCGG GCAGTTCATGTTGCAGCTCAGTATGGACAAACAGCATTCTTGCACCACATTEST: gi|29618951|gb|CB623963.1|CB623963
genomic: TGCTGGAGAACGGTGCGAGGGTCGAGGCGGCCGATGTGAATGGCTACCGGgtaatgcagt ... attatgtcagGCAGTTCATGTTGCAGCTCAGTATGGACAAACAGCATTCTTGCACCACATT
EST: TGCTGGAGAACGGTGCGAGGGTCGAGGCGGCCGATGTGAATGGCTACCGG GCAGTTCATGTTGCAGCTCAGTATGGACAAACAGCATTCTTGCACCACATTEST: gi|88410230|gb|CI575828.1|CI575828
genomic: TGCTGGAGAACGGTGCGAGGGTCGAGGCGGCCGATGTGAATGGCTACCGGgtaatgcagt ... attatgtcagGCAGTTCATGTTGCAGCTCAGTATGGACAAACAGCATTCTTGCACCACATT
EST: TGCTGGAGAACGGTGCGAGGGTCGAGGCGGCCGATGTGAATGGCTACCGG GCAGTTCATGTTGCAGCTCAGTATGGACAAACAGCATTCTTGCACCACATT
genomic: TGCTGGAGAACGGTGCGAGGGTCGAGGCGGCCGATGTGAATGGCTACCGGgtaatgcagt ... attatgtcagGCAGTTCATGTTGCAGCTCAGTATGGACAAACAGCATTCTTGCACCACATT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGCCCTGCACTGGGCGGCGGTGCGTGGAGCCATAGCTGCGGCGGACGTGTTGCTGGAGAACGGTGCGAGGGTCGAGGCGGCCGATGTGAATGGCTACCGGgtaatgcagtcgttttgttgctctgaaaactctaggtggtcttaggagatcagttgggagattagaatgtaggatgtttgttgattttagactttagatt
- - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA