1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
AGAAAGAAAATCATCTGAGAGTCTCTTCATGTCACATTTTCCTTCAACGCTAAAAAAGCAACTTGTTGATGATTGGGAGTTTGTCACGCAGCTGGGTAAGgtattcaaatctttccctgagctgtctttgatttatttatgtccaaatcacaaccttcattgttcaattataattgaatattgtgtctgagttggcatgg...
species | Oryza sativa |
transcript | LOC_Os11g34300.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: CTTGTTGATGATTGGGAGTTTGTCACGCAGCTGGGTAAG CTTGTGAAGCTACCTCGGTCCCCCACGGTCGATGATATTCTAAAGAAGTACEST: gi|88415243|gb|CI584066.1|CI584066
genomic: CTTGTTGATGATTGGGAGTTTGTCACGCAGCTGGGTAAGgtattcaaat ... tgtactgcagCTTGTGAAGCTACCTCGGTCCCCCACGGTCGATGATATTCTAAAGAAGTAC
EST: TAAAAAAGCAACTTGTTGATGATTGGGAGTTTGTCACGCAGCTGGGTAAG CTTGTGAAGCTACCTCGGTCCCCCACGGTCGATGATATTCTAAAGAAGTACEST: gi|89173985|gb|CI041878.1|CI041878
genomic: TAAAAAAGCAACTTGTTGATGATTGGGAGTTTGTCACGCAGCTGGGTAAGgtattcaaat ... tgtactgcagCTTGTGAAGCTACCTCGGTCCCCCACGGTCGATGATATTCTAAAGAAGTAC
EST: TAAAAAAGCAACTTGTTGATGATTGGGAGTTTGTCACGCAGCTGGGTAAG CTTGTGAAGCTACCTCGGTCCCCCACGGTCGATGATATTCTAAAGAAGTACEST: gi|88415227|gb|CI584050.1|CI584050
genomic: TAAAAAAGCAACTTGTTGATGATTGGGAGTTTGTCACGCAGCTGGGTAAGgtattcaaat ... tgtactgcagCTTGTGAAGCTACCTCGGTCCCCCACGGTCGATGATATTCTAAAGAAGTAC
EST: TAAAAAAGCAACTTGTTGATGATTGGGAGTTTGTCACGCAGCTGGGTAAG CTTGTGAAGCTACCTCGGTCCCCCACGGTCGATGATATTCTAAAGAAGTAC
genomic: TAAAAAAGCAACTTGTTGATGATTGGGAGTTTGTCACGCAGCTGGGTAAGgtattcaaat ... tgtactgcagCTTGTGAAGCTACCTCGGTCCCCCACGGTCGATGATATTCTAAAGAAGTAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGAAAGAAAATCATCTGAGAGTCTCTTCATGTCACATTTTCCTTCAACGCTAAAAAAGCAACTTGTTGATGATTGGGAGTTTGTCACGCAGCTGGGTAAGgtattcaaatctttccctgagctgtctttgatttatttatgtccaaatcacaaccttcattgttcaattataattgaatattgtgtctgagttggcatgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG