1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
CCTGGCTGTTCTTCACTTGGTGTTGGAGCTTTCTCAGAGAATGGCCCATTCAGGCCAAGTGGGCAGGTGCTAGTGAAGAATGAGTACAGTTGGAACAAAGgtgtgtgtgagaccatgagtgctacctcacttaccttttgtttgtggctttgcatgccaattccaatttcttgaaccttttgctggatcaagaaagctgaacatgttttaactgttttggtggtggtgctgttactctgcag
species | Oryza sativa |
transcript | LOC_Os11g31980.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: CAGGCCAAGTGGGCAGGTGCTAGTGAAGAATGAGTACAGTTGGAACAAAG AGGCCAATGTGATCTACCTGGAGACACCAGCTGGTGTTGGTTACTCCTACTEST: gi|58656432|gb|CK045112.1|CK045112
genomic: CAGGCCAAGTGGGCAGGTGCTAGTGAAGAATGAGTACAGTTGGAACAAAGgtgtgtgtga ... tactctgcagAGGCCAATGTGATCTACCTGGAGACACCAGCTGGTGTTGGTTACTCCTACT
EST: CAGGCCAAGTGGGCAGGTGCTAGTGAAGAATGAGTACAGTTGGAACAAAG AGGCCAATGTGATCTACCTGGAGACACCAGCTGGTGTTGGTTACTCCTACTEST: gi|58654309|gb|CK042989.1|CK042989
genomic: CAGGCCAAGTGGGCAGGTGCTAGTGAAGAATGAGTACAGTTGGAACAAAGgtgtgtgtga ... tactctgcagAGGCCAATGTGATCTACCTGGAGACACCAGCTGGTGTTGGTTACTCCTACT
EST: CAGGCCAAGTGGGCAGGTGCTAGTGAAGAATGAGTACAGTTGGAACAAAG AGGCCAATGTGATCTACCTGGAGACACCAGCTGGTGTTGGTTACTCCTACTEST: gi|58659826|gb|CK048506.1|CK048506
genomic: CAGGCCAAGTGGGCAGGTGCTAGTGAAGAATGAGTACAGTTGGAACAAAGgtgtgtgtga ... tactctgcagAGGCCAATGTGATCTACCTGGAGACACCAGCTGGTGTTGGTTACTCCTACT
EST: CAGGCCAAGTGGGCAGGTGCTAGTGAAGAATGAGTACAGTTGGAACAAAG AGGCCAATGTGATCTACCTGGAGACACCAGCTGGTGTTGGTTACTCCTACTEST: gi|58663484|gb|CK052170.1|CK052170
genomic: CAGGCCAAGTGGGCAGGTGCTAGTGAAGAATGAGTACAGTTGGAACAAAGgtgtgtgtga ... tactctgcagAGGCCAATGTGATCTACCTGGAGACACCAGCTGGTGTTGGTTACTCCTACT
EST: CAGGCCAAGTGGGCAGGTGCTAGTGAAGAATGAGTACAGTTGGAACAAAG AGGCCAATGTGATCT
genomic: CAGGCCAAGTGGGCAGGTGCTAGTGAAGAATGAGTACAGTTGGAACAAAGgtgtgtgtga ... tactctgcagAGGCCAATGTGATCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCTGGCTGTTCTTCACTTGGTGTTGGAGCTTTCTCAGAGAATGGCCCATTCAGGCCAAGTGGGCAGGTGCTAGTGAAGAATGAGTACAGTTGGAACAAAGgtgtgtgtgagaccatgagtgctacctcacttaccttttgtttgtggctttgcatgccaattccaatttcttgaaccttttgctggatcaagaaagctgaacatgttttaactgttttggtggtggtgctgttactctgcag
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