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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAGCCTCTGAAGCTGGGTTTGGTAATGAAATGTACAAGATATTAACAGCAGCAGCATTGAGTGTTATGTTAAACCGGTCTCTCATCATCGGGCAAACCAGgcatgtgcatttactctcaattatttatcttccttatctatcgggtttgaatacgttggacctatattttgactttcctgtgatgattatatatgagata...

Basic information

species Oryza sativa
transcript LOC_Os11g31110.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os11g31110.1 (Oryza sativa), 5'ss of exon 2
lower sequence: GRMZM2G015854_T01 (Zea mays), 5'ss of exon 2
AAGCCTCTGAAGCTGGGTTTGGTAATGAAATGTACAAGATATTAACAGCAGCAGCATTGAGTGTTATGTTAAACCGGTCTCTCATCATCGGGCAAACCAGgcatgtgcatttactctcaattatttatcttccttatct---atcgggtttgaatacg-ttggacctatattttgactttcctgtgatgattatatatgagata
|||| ||||||||||| ||||| ||||||||||||||||| |||||||| | ||| |||||||| ||||||||||| ||| | |||||||||||||| |||||| || |||||| |||   || || || |   |||||   ||  |  |   || || |||| |  |    |||| ||   ||   |   |   | |      
AAGCATCTGAAGCTGGATTTGGCAATGAAATGTACAAGATCTTAACAGCGGGAGCCTTGAGTGTCATGTTAAACCGATCTTTGATCATCGGGCAAACAAGgcatatggatttacactctgctacttttcatgtgtatctttgatttgactattatgcgattggtcggaagcattgagttctatgaatttgcttcttttcc----

upper sequence: LOC_Os11g31110.1 (Oryza sativa), 5'ss of exon 2
lower sequence: GLYMA16G26160.2 (Glycine max), 5'ss of exon 2
---------------------------------------------------------------AAGCCTCTGAAGCTGGGTTTGGTAATGAAATGTACAAGATATTAACAGCAGCAGCATTGAGTGTTATGTTAAACCGGTCTCTCATCATCGGGCAAACCAGgcatgtgcatttactctcaattatttatcttccttatctatcgggtttgaatacgttggacctatattttgactttcctgtgatgattatatatgagata
                                                               | ||   ||| || || ||||| ||||||||||||||| | ||||| || |||||| | ||| | ||| ||||||||||  | ||||| || |||||||||||| |   |||  ||||||   ||| |  |                                                                     
GTGCTTCAAGAGTCAGGGATTTTCCCCCAGAGCAATTCTGTAGACATGGCTTTGTTCTGGGGAAGGCAAGTGAGGCAGGTTTTGGGAATGAAATgtacaaggtcttaactgctgcagcacttagtataatgctaaaccggtccttgatcattggtcaaaccaggcatattggttttttctcaagcctttctaat---------------------------------------------------------------------

upper sequence: LOC_Os11g31110.1 (Oryza sativa), 5'ss of exon 2
lower sequence: GLYMA16G05700.1 (Glycine max), 5'ss of exon 2
AAGCCTCTGAAGCTGGGTTTGGTAATGAAATGTACAAGATATTAACAGCAGCAGCATTGAGTGTTATGTTAAACCGGTCTCTCATCATCGGGCAAACCAGgcatgtgcatttactctcaattatttatcttccttatctatcgggtttgaatacgttggacctatattttgactttcctgtgatgattatatatgagata---
|  |  |||| ||||| ||||| ||||||||||||||| | ||||| || |||||| ||||| | ||| ||||||||||  | ||||| || |||||||||||| |   ||   || |||   |||  |||  | || | |  |   | |     ||  |   ||   |  | |||| | | | | |||  |  | | ||   
AGACTGCTGAGGCTGGTTTTGGGAATGAAATGTACAAGGTCTTAACTGCTGCAGCACTGAGTATAATGCTAAACCGGTCCTTGATCATTGGCCAAACCAGgcatattggttctttcccaagccttt--ctttttcatttttaagagctaaccttttttaattgatgcctgaaatttctttt-agggttagtttggcggtatct

upper sequence: LOC_Os11g31110.1 (Oryza sativa), 5'ss of exon 2
lower sequence: GLYMA16G26160.1 (Glycine max), 5'ss of exon 2
AAGCCTCTGAAGCTGGGTTTGGTAATGAAATGTACAAGATATTAACAGCAGCAGCATTGAGTGTTATGTTAAACCGGTCTCTCATCATCGGGCAAACCAGgcatgtgcatttactctcaattatttatcttccttatctatcgggtttgaatacgttggacctatattttgactttcctgtgatgattatatatgagata---
| ||   ||| || || ||||| ||||||||||||||| | ||||| || |||||| | ||| | ||| ||||||||||  | ||||| || |||||||||||| |   |||  ||||||   |||  ||   || ||| |    ||| || |  ||  || | | | |  |||    | |   || |  || |    |    
AGGCAAGTGAGGCAGGTTTTGGGAATGAAATGTACAAGGTCTTAACTGCTGCAGCACTTAGTATAATGCTAAACCGGTCCTTGATCATTGGTCAAACCAGgcatattggttttttctcaagccttt--ctaatttttcttttcacttttaagaacttttacat-tctctcaactgaaatttagagaatccatgttcattggct

upper sequence: LOC_Os11g31110.1 (Oryza sativa), 5'ss of exon 2
lower sequence: AT3G26950.1 (Arabidopsis thaliana), 5'ss of exon 2
AAGCCTCTGAAGCTGGGTTTGGTAATGAAATGTACAAGATATTAACAGCAGCAGCATTGAGTGTTATGTTAAACCGGTCTCTCATCATCGGGCAAACCAGgcatgtgc--atttactctcaattatttatcttccttatctatcgggtt-tgaatacgttggacctatattttgactttcctgtgatgattatatatgagata------------------
|| |  | |||||||| ||||| || |||||||| ||||| |||||| |||||||||||||  | ||||||||| | ||  | ||||| || || ||||||||| |     ||   |||||||  ||| |  ||  |||  |  |   | | | || | | |   | || ||||  ||   |||  || |||||| |                        
AAACAGCAGAAGCTGGATTTGGAAACGAAATGTATAAGATCTTAACATCAGCAGCATTGAGCATAATGTTAAACAGATCCTTGATCATTGGCCAGACCAGgcatatattggttctttctcaatccttt-ttctctatattaactgaactgttactatgcttg--ttgtagtttgtgttatttgtcttgtttatatttctttctttctctgggtatcctcag

upper sequence: LOC_Os11g31110.1 (Oryza sativa), 5'ss of exon 2
lower sequence: Vv17s0000g00840.t01 (Vitis vinifera), 5'ss of exon 2
AAGCCTCTGAAGCTGGGTTTGGTAATGAAATGTACAAGATATTAACAGCAGCAGCATTGAGTGTTATGTTAAACCGGTCTCTCATCATCGGGCAAACCAGgcatgtgcatttactctcaattatttatcttccttatctatcgggtttgaatacgttggacctatattttgactttcctgtgatgattatatatgagata-------------------------------------------------------
                                                      |||||||| ||||||||||||| || |||||||||||||||||||||||| |   ||  | |||     |||   ||  |  |  | |   ||| |||  ||   ||    | ||  || |   | || |  ||  |  ||  |||                                                       
------------------------------------------------------CATTGAGTATTATGTTAAACCGTTCACTCATCATCGGGCAAACCAGGCATATTGGTTCTCCCTCCTGCCTTTCCTTTTTTACTAGAACAAATTTAAATTTgtcatactatcacttcaacctggatttgtttgttccac-tgccatattggtgattccagttgattgctcttaaaaacttttttggcagtgaaactaatgac

upper sequence: LOC_Os11g31110.1 (Oryza sativa), 5'ss of exon 2
lower sequence: Vv14s0068g01550.t01 (Vitis vinifera), 5'ss of exon 2
AAGCCTCTGAAGCTGGGTTTGGTAATGAAATGTACAAGATATTAACAGCAGCAGCATTGAGTGTTATGTTAAACCGGTCTCTCATCATCGGGCAAACCAGgcatgtgcatttactctcaattatttatcttccttatcta----tcgggtttgaatacgttggacctatattttgactttcctgtgatgattatatatgagata
| || || ||||| || ||||| ||||||||||||||||| || || || |||||||||||| | ||||| |||||||| || ||||||||||||||||||||| |   ||   |||| |   ||| | ||   |||  |    | |  |||   ||   || |  ||  | |  ||       || |  || | | |    | 
AGGCATCAGAAGCAGGATTTGGCAATGAAATGTACAAGATCTTGACTGCTGCAGCATTGAGTATCATGTTGAACCGGTCCCTGATCATCGGGCAAACCAGgcatattggttctttctccagcctttctgttttatattcaaaattggcttttctctataatgaatttagttataaacaa----atgctagttttgtgtagcctt