Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGAGGACGGCGAATCGACGGGGGGATCGAAGGTCTCGCTGGGGCGCCGTGCAGGGGTGAGGAATCTGGCTCTTTCATCATCGCTAAATCTGATTAAAGATgtgtgtttttgtgtttttttgtgctgaagtgcgaatctgtgatggttttggatgatgcgaattgttag

Basic information

species Oryza sativa
transcript LOC_Os11g28300.2
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88725872|gb|CI747384.1|CI747384
EST:     CAGGGGTGAGGAATCTGGCTCTTTCATCATCGCTAAATCTGATTAAAGAT                         GGGTTCTTGCACGGGCTGAAGAAGGAAGCAGTGGTGGAGGGAGACCATGGG
genomic: CAGGGGTGAGGAATCTGGCTCTTTCATCATCGCTAAATCTGATTAAAGATgtgtgttttt ... gaattgttagGGGTTCTTGCACGGGCTGAAGAAGGAAGCAGTGGTGGAGGGAGACCATGGG
EST: gi|88731527|gb|CI755140.1|CI755140
EST:     CAGGGGTGAGGAATCTGGCTCTTTCATCATCGCTAAATCTGATTAAAGAT                         GGGTTCTTGCACGGGCTGAAGAAGGAAGCAGTGGTGGAGGGAGACCATGGG
genomic: CAGGGGTGAGGAATCTGGCTCTTTCATCATCGCTAAATCTGATTAAAGATgtgtgttttt ... gaattgttagGGGTTCTTGCACGGGCTGAAGAAGGAAGCAGTGGTGGAGGGAGACCATGGG