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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCAAGAAGAAAGGGCAGCGCACCAAGGCGTTCGTCCGGGTCCTCAAGTACTCCAATGGCGGCGTCCTCGAGgtacacttcttaatttccttttcagacatccttcctgtccagatgatccatggttgattcgattatctgaatattgatccatggatggatggatgcacgcag

Basic information

species Oryza sativa
transcript LOC_Os11g17600.3
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os11g17600.3 (Oryza sativa), 5'ss of exon 2
lower sequence: GRMZM2G136815_T01 (Zea mays), 5'ss of exon 2
CCAAGAAGAAAGGGCAGCGCACCAAGGCGTTCGTCCGGGTCCTCAAGTACTCCAATGGCGGCGTCCTCGAGgta----------cacttcttaatttccttttcagacatcctt------cctgtccagatgatccatggtt---gattcgattatctgaatattgatccatggatggatggatgcacgcag--------
|||||   ||||||||  | |||||| ||||| | ||||| ||||| |||||||||||||| |||||||||||           |   |||   |||| ||    | | ||||       || |    ||  ||  || ||    ||| || |  ||||| |    || |||| ||| ||| || ||| ||         
CCAAGGCCAAAGGGCACAGGACCAAGACGTTCCTGCGGGTGCTCAAATACTCCAATGGCGGGGTCCTCGAGgtgaccttccagccgtctctctctttctttgctggtcttcctcagatcgccagaatggaaaattaattgtaaaagatgcgttattctgattgcctatgcatgcatgcatgtat-cactcactgtatcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88389039|gb|CI595273.1|CI595273
EST:     CAAGGCCGTTCGTCCGGGTCCTCAAGTACTCCAATGGCGGCGTCCTCGAG                         CCTGCCAAGGTGTACAAGATGAAGCACCTCTCCAAGGTGGAGGT
genomic: CAAGGC-GTTCGTCCGGGTCCTCAAGTACTCCAATGGCGGCGTCCTCGAGgtacacttct ... atgcacgcagCCTGCCAAGGTGTACAAGATGAAGCACCTCTCCAAGGTGGAGGT