1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
TGGCATGATCAAGATCCGTATGCTTAAGACGTCAAGGTATATCAGCTTATTTCCAGAAGCATCCCCATCATGTACGTCCGCAATGACAAATGGTGTGAAGgtgagattgtccaaagatttcctcatcatttaatttaattgagcatgatgagttacatgggataacttcctctttgatattctctgtacaagaaaggcat...
species | Oryza sativa |
transcript | LOC_Os11g16390.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: TTCCAGAAGCATCCCCATCATGTACGTCCGCAATGACAAATGGTGTGAAG GTACGTGCATCTGCTGTCTTTGCACCAGAGCACCCTGAAAGTAGGCGGCCTEST: gi|29664982|gb|CB661257.1|CB661257
genomic: TTCCAGAAGCATCCCCATCATGTACGTCCGCAATGACAAATGGTGTGAAGgtgagattgt ... attttttcagGTACGTGCATCTGCTGTCTTTGCACCAGAGCACCCTGAAAGTAGGCGGCCT
EST: TTCCAGAAGCATCCCCATCATGTACGTCCGCAATGACAAATGGTGTGAAG GTACGTGCATCTGCTGTCTTTGCACCAGAGCACCCTGAAAGTAGGCGGCCTEST: gi|33381940|gb|CF197283.1|CF197283
genomic: TTCCAGAAGCATCCCCATCATGTACGTCCGCAATGACAAATGGTGTGAAGgtgagattgt ... attttttcagGTACGTGCATCTGCTGTCTTTGCACCAGAGCACCCTGAAAGTAGGCGGCCT
EST: TTCCAGAAGCATCCCCATCATGTACGTCCGCAATGACAAATGGTGTGAAG GTACGTGCATCTGCTGTCTTTGCACCAGAGCACCCTGAAAGTAGGCGGCCTEST: gi|29664979|gb|CB661254.1|CB661254
genomic: TTCCAGAAGCATCCCCATCATGTACGTCCGCAATGACAAATGGTGTGAAGgtgagattgt ... attttttcagGTACGTGCATCTGCTGTCTTTGCACCAGAGCACCCTGAAAGTAGGCGGCCT
EST: TTCCAGAAGCATCCCCATCATGTACGTCCGCAATGACAAATGGTGTGAAG GTACGTGCATCTGCTGTCTTTGCACCAGAGCACCCTGAAAGTAGGCGGCCTEST: gi|58695501|gb|CK084188.1|CK084188
genomic: TTCCAGAAGCATCCCCATCATGTACGTCCGCAATGACAAATGGTGTGAAGgtgagattgt ... attttttcagGTACGTGCATCTGCTGTCTTTGCACCAGAGCACCCTGAAAGTAGGCGGCCT
EST: TTCCAGAAGCATCCCCATCATGTACGTCCGCAATGACAAATGGTGTGAAG GTACGTGCATCTGCTGTCTTTGCACCAGAGCACCCTGAAAGTAGGCGGCCTEST: gi|218484548|gb|FG964491.1|FG964491
genomic: TTCCAGAAGCATCCCCATCATGTACGTCCGCAATGACAAATGGTGTGAAGgtgagattgt ... attttttcagGTACGTGCATCTGCTGTCTTTGCACCAGAGCACCCTGAAAGTAGGCGGCCT
EST: TTCCAGAAGCATCCCCATCATGTACGTCCGCAATGACAAATGGTGTGAAG GTACGTGCATCTGCTGTCTTTGCACCAGAGCACCCTGAAAGTAGGCGGCCTEST: gi|13420666|gb|AU174756.1|AU174756
genomic: TTCCAGAAGCATCCCCATCATGTACGTCCGCAATGACAAATGGTGTGAAGgtgagattgt ... attttttcagGTACGTGCATCTGCTGTCTTTGCACCAGAGCACCCTGAAAGTAGGCGGCCT
EST: TTCCAGAAGCATCCCCATCATGTACGTCCGCAATGACAAATGGTGTGAAG GTACGTGCATCTGCTGTCTTTGCACCAGAGCACCCTGAAAGTAGGCGGCCTEST: gi|29677579|gb|CB673854.1|CB673854
genomic: TTCCAGAAGCATCCCCATCATGTACGTCCGCAATGACAAATGGTGTGAAGgtgagattgt ... attttttcagGTACGTGCATCTGCTGTCTTTGCACCAGAGCACCCTGAAAGTAGGCGGCCT
EST: TTCCAGAAGCATCCCCATCATGTACGTCCGCAATGACAAATGGTGTGAAG GTACGTGCATCTGCTGTCTTTGCACCAGAGCACCCTGAAAGTAGGCGGCCTEST: gi|29658842|gb|CB655117.1|CB655117
genomic: TTCCAGAAGCATCCCCATCATGTACGTCCGCAATGACAAATGGTGTGAAGgtgagattgt ... attttttcagGTACGTGCATCTGCTGTCTTTGCACCAGAGCACCCTGAAAGTAGGCGGCCT
EST: TTCCAGAAGCATCCCCATCATGTACGTCCGCAATGACAAATGGTGTGAAG GTACGTGCATCTGCTGTCTTTGCACCAGAGCACCCTGAAAGTAGGCGGCCTEST: gi|29645119|gb|CB650126.1|CB650126
genomic: TTCCAGAAGCATCCCCATCATGTACGTCCGCAATGACAAATGGTGTGAAGgtgagattgt ... attttttcagGTACGTGCATCTGCTGTCTTTGCACCAGAGCACCCTGAAAGTAGGCGGCCT
EST: TTCCAGAAGCATCCCCATCATGTACGTCCGCAATGACAAATGGTGTGAAG GTACGTGCATCTGCTGTCTTTGCACCAGAGCACCCTGAAAGTAGGCGGCCTEST: gi|58591459|gb|CF989767.1|CF989767
genomic: TTCCAGAAGCATCCCCATCATGTACGTCCGCAATGACAAATGGTGTGAAGgtgagattgt ... attttttcagGTACGTGCATCTGCTGTCTTTGCACCAGAGCACCCTGAAAGTAGGCGGCCT
EST: TTCCAGAAGCATCCCCATCATGTACGTCCGCAATGACAAATGGTGTGAAG GTACGTGCATCTGCTGTCEST: gi|29664980|gb|CB661255.1|CB661255
genomic: TTCCAGAAGCATCCCCATCATGTACGTCCGCAATGACAAATGGTGTGAAGgtgagattgt ... attttttcagGTACGTGCATCTGCTGTC
EST: TTCCAGAAGCATCCCCATCATGTACGTCCGCAATGACAAATGGTGTGAAG GTACGTGCATCTGCTGTCTTTGCACCAGAGCACCCTGAAAGTAGGCGGCCT
genomic: TTCCAGAAGCATCCCCATCATGTACGTCCGCAATGACAAATGGTGTGAAGgtgagattgt ... attttttcagGTACGTGCATCTGCTGTCTTTGCACCAGAGCACCCTGAAAGTAGGCGGCCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGGCATGATCAAGATCCGTATGCTTAAGACGTCAAGGTATATCAGCTTATTTCCAGAAGCATCCCCATCATGTACGTCCGCAATGACAAATGGTGTGAAGgtgagattgtccaaagatttcctcatcatttaatttaattgagcatgatgagttacatgggataacttcctctttgatattctctgtacaagaaaggcat
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