1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
TCTGTTCAGTTAAGCACTGTCAATGCATGGAGACATTCTCAGgtaccaatctactacacagtcagtgcacatggagagctcattaattcaacattttcttgctttacttgatcttgcag
species | Oryza sativa |
transcript | LOC_Os11g16290.2 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: TCTGTTCAGTTAAGCACTGTCAATGCATGGAGACATTCTCAG AGCTATTCAAGGGACCAGAAATTAGCATTGATGGAAATATTCGATGTTCTGEST: gi|29674103|gb|CB670378.1|CB670378
genomic: TCTGTTCAGTTAAGCACTGTCAATGCATGGAGACATTCTCAGgtaccaatct ... gatcttgcagAGCTATTCAAGGGACCAGAAATTAGCATTGATGGAAATATTCGATGTTCTG
EST: GTCTGTTCAGTTAAGCACTGTCAATGCATGGAGACATTCTCAG AGCTATTCAAGGGACCAGAAATTAGCATTGATGGAAATATTCGATGTTCTGEST: gi|29634506|gb|CB639515.1|CB639515
genomic: GTCTGTTCAGTTAAGCACTGTCAATGCATGGAGACATTCTCAGgtaccaatct ... gatcttgcagAGCTATTCAAGGGACCAGAAATTAGCATTGATGGAAATATTCGATGTTCTG
EST: TCTGTTCAGTTAAGCACTGTCAATGCATGGAGACATTCTCAG AGCTATTCAAGGGACCAGAAATTAGCATTGATGGAAATATTCGATGTTCTGEST: gi|86904471|gb|CI308681.1|CI308681
genomic: TCTGTTCAGTTAAGCACTGTCAATGCATGGAGACATTCTCAGgtaccaatct ... gatcttgcagAGCTATTCAAGGGACCAGAAATTAGCATTGATGGAAATATTCGATGTTCTG
EST: TCTGTTCAGTTAAGCACTGTCAATGCATGGAGACATTCTCAG AGCTATTCAAGGGACCAGAAATTAGCATTGATGGAAATATTCGATGTTCTG
genomic: TCTGTTCAGTTAAGCACTGTCAATGCATGGAGACATTCTCAGgtaccaatct ... gatcttgcagAGCTATTCAAGGGACCAGAAATTAGCATTGATGGAAATATTCGATGTTCTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCTGTTCAGTTAAGCACTGTCAATGCATGGAGACATTCTCAGgtaccaatctactacacagtcagtgcacatggagagctcattaattcaacattttcttgctttacttgatcttgcag
- - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - TGGAGA