Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGGTGAGGACTGGTGACTACCGCCAGCTCTTCCACCCTGAGCAGCTCATCAGTGGCAAGGAGGATGCAGCCAACAACTTTGCCCGTGGTCACTACACCAgtaagttccatctttactactatctgttcacaatttctggaaatgtgattgtttggatgtctaacatgtggtgccgttcgtttcag

Basic information

species Oryza sativa
transcript LOC_Os11g14220.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58686707|gb|CK075394.1|CK075394
EST:     CAGTGGCAAGGAGGATGCAGCCAACAACTTTGCCCGTGGTCACTACACCA                         TTGGCAAGGAGATTGTTGATCTGTGCCTTGACCGCATCAGGAAGCTTGCCG
genomic: CAGTGGCAAGGAGGATGCAGCCAACAACTTTGCCCGTGGTCACTACACCAgtaagttcca ... ttcgtttcagTTGGCAAGGAGATTGTTGATCTGTGCCTTGACCGCATCAGGAAGCTTGCCG
EST: gi|29640923|gb|CB645930.1|CB645930
EST:     CAGTGGCAAGGAGGATGCAGCCAACAACTTTGCCCGTGGTCACTACACCA                         TTGGCAAGGAGATTGTTGATCTGTGCCTTGACCGCATCAGGAAGCTTGCCG
genomic: CAGTGGCAAGGAGGATGCAGCCAACAACTTTGCCCGTGGTCACTACACCAgtaagttcca ... ttcgtttcagTTGGCAAGGAGATTGTTGATCTGTGCCTTGACCGCATCAGGAAGCTTGCCG
EST: gi|58672330|gb|CK061016.1|CK061016
EST:     CAGTGGCAAGGAGGATGCAGCCAACAACTTTGCCCGTGGTCACTACACCA                         TTGGCAAGGAGATTGTTGATCTGTGCCTTGACCGCATCAGGAAGCTTGCCG
genomic: CAGTGGCAAGGAGGATGCAGCCAACAACTTTGCCCGTGGTCACTACACCAgtaagttcca ... ttcgtttcagTTGGCAAGGAGATTGTTGATCTGTGCCTTGACCGCATCAGGAAGCTTGCCG
EST: gi|58665625|gb|CK054311.1|CK054311
EST:     CAGTGGCCAGGAGGATGCAGCCAACAACTTTGCCCGTGGTCACTACACCA                         TTGGCAAGGAGATTGTTGATCTGTGCCTTGACCGCATCAGGAAGCTTGCCG
genomic: CAGTGGCAAGGAGGATGCAGCCAACAACTTTGCCCGTGGTCACTACACCAgtaagttcca ... ttcgtttcagTTGGCAAGGAGATTGTTGATCTGTGCCTTGACCGCATCAGGAAGCTTGCCG
EST: gi|569779|gb|D40628.1|D40628
EST:     CAGTGGCAAGGAGGATGCAGCCAACAACTTTGCCCGTGGTCACTACACCA                         TTGGCAAGGAGATTGTTGATCTGTGCCTTGACCGCATCAGGAAGCTTGCCG
genomic: CAGTGGCAAGGAGGATGCAGCCAACAACTTTGCCCGTGGTCACTACACCAgtaagttcca ... ttcgtttcagTTGGCAAGGAGATTGTTGATCTGTGCCTTGACCGCATCAGGAAGCTTGCCG
EST: gi|58597951|gb|CK008479.1|CK008479
EST:     GCAGCCAACAACTTTGCCCGTGGTCACTACACCA                         TTGGCAAGGAGATTGTTGATCTGTGCCTTGACCGCATCAGGAAGCTTGCCG
genomic: GCAGCCAACAACTTTGCCCGTGGTCACTACACCAgtaagttcca ... ttcgtttcagTTGGCAAGGAGATTGTTGATCTGTGCCTTGACCGCATCAGGAAGCTTGCCG
EST: gi|29685655|gb|CB681930.1|CB681930
EST:     CAGTGGCAAGGAGGATGCAGCCAACAACTTTGCCCGTGGTCACTACACCA                         TTGGCAAGGAGATTGTTGATCTGTGCCTTGACCGCATCAGGAAGCTTGCCG
genomic: CAGTGGCAAGGAGGATGCAGCCAACAACTTTGCCCGTGGTCACTACACCAgtaagttcca ... ttcgtttcagTTGGCAAGGAGATTGTTGATCTGTGCCTTGACCGCATCAGGAAGCTTGCCG
EST: gi|29681154|gb|CB677429.1|CB677429
EST:     CAGTGGCAAGGAGGATGCAGCCAACAACTTTGCCCGTGGTCACTACACCA                         TTGGCAAGGAGATTGTTGATCTGTGCCTTGACCGCATCAGGAAGCTTGCCG
genomic: CAGTGGCAAGGAGGATGCAGCCAACAACTTTGCCCGTGGTCACTACACCAgtaagttcca ... ttcgtttcagTTGGCAAGGAGATTGTTGATCTGTGCCTTGACCGCATCAGGAAGCTTGCCG
EST: gi|58657397|gb|CK046077.1|CK046077
EST:     CAGTGGCAAGGAGGATGCAGCCAACAACGTGGCCCGTGGTCACTACACCA                         TTGGCAAGGAGATTGTTGATCTGTGCCTTGACCGCATCAGGAAGCTTGCCG
genomic: CAGTGGCAAGGAGGATGCAGCCAACAACTTTGCCCGTGGTCACTACACCAgtaagttcca ... ttcgtttcagTTGGCAAGGAGATTGTTGATCTGTGCCTTGACCGCATCAGGAAGCTTGCCG
EST: gi|58677890|gb|CK066577.1|CK066577
EST:     CAGTGGCAAGGAGGATGCAGCCAACAACTTTGCCCGTGGTCACTACACCA                         TTGGCAAGGAGATTGTTGATCTGTGCCTTGACCGCATCAGGAAGCTTGCCG
genomic: CAGTGGCAAGGAGGATGCAGCCAACAACTTTGCCCGTGGTCACTACACCAgtaagttcca ... ttcgtttcagTTGGCAAGGAGATTGTTGATCTGTGCCTTGACCGCATCAGGAAGCTTGCCG
EST: gi|58596392|gb|CK006920.1|CK006920
EST:     CAGTGGCAAGGAGGATGCAGCCAACAACTTTGCCCGTGGTCACTACACCA                         TTGGCAAGGAGATTGTTGATCTGTGCCTTGACCGCATCAGGAAGCTTGCCG
genomic: CAGTGGCAAGGAGGATGCAGCCAACAACTTTGCCCGTGGTCACTACACCAgtaagttcca ... ttcgtttcagTTGGCAAGGAGATTGTTGATCTGTGCCTTGACCGCATCAGGAAGCTTGCCG
EST: gi|58591982|gb|CF990290.1|CF990290
EST:     CAGTGGCAAGGAGGATGCAGCCAACAACTTTGCCCGTGGTCACTACACCA                         TTGGCAAGGAGATTGTTGATCTGTGCCTTGACCGCATCAGGAAGCTTGCCG
genomic: CAGTGGCAAGGAGGATGCAGCCAACAACTTTGCCCGTGGTCACTACACCAgtaagttcca ... ttcgtttcagTTGGCAAGGAGATTGTTGATCTGTGCCTTGACCGCATCAGGAAGCTTGCCG
EST: gi|29646013|gb|CB651020.1|CB651020
EST:     CAGTGGCAAGGAGGATGCAGCCAACAACTTTGCCCGTGGTCACTACACCA                         TTGGCAAGGAGATTGTTGATCTGTGCCTTGACCGCATCAGGAAGCTTGCCG
genomic: CAGTGGCAAGGAGGATGCAGCCAACAACTTTGCCCGTGGTCACTACACCAgtaagttcca ... ttcgtttcagTTGGCAAGGAGATTGTTGATCTGTGCCTTGACCGCATCAGGAAGCTTGCCG
EST: gi|58681293|gb|CK069980.1|CK069980
EST:     CAGTGGCAAGGAGGATGCAGCCAACAACTTTGCCCGTGGTCACTACACCA                         TTGGCAAGGAGATTGTTGATCTGTGCCTTGACCGCATCAGGAAGCTTGCCG
genomic: CAGTGGCAAGGAGGATGCAGCCAACAACTTTGCCCGTGGTCACTACACCAgtaagttcca ... ttcgtttcagTTGGCAAGGAGATTGTTGATCTGTGCCTTGACCGCATCAGGAAGCTTGCCG
EST: gi|58662189|gb|CK050869.1|CK050869
EST:     CAGTGGCAAGGAGGATGCAGCCAACAACTTTGCCCGTGGTCACTACACCA                         TTGGCAAGGAGATTGTTGATCTGTGCCTTGACCGCATCAGGAAGCTTGCCG
genomic: CAGTGGCAAGGAGGATGCAGCCAACAACTTTGCCCGTGGTCACTACACCAgtaagttcca ... ttcgtttcagTTGGCAAGGAGATTGTTGATCTGTGCCTTGACCGCATCAGGAAGCTTGCCG
EST: gi|32948138|gb|BP184710.1|BP184710
EST:     AACAACTTTGCCCGTGGTCACTACACCA                         TTGGCAAGGAGATTGTTGATCTGTGCCTTGACCGCATCAGGAAGCTTACCG
genomic: AACAACTTTGCCCGTGGTCACTACACCAgtaagttcca ... ttcgtttcagTTGGCAAGGAGATTGTTGATCTGTGCCTTGACCGCATCAGGAAGCTTGCCG
EST: gi|58679483|gb|CK068170.1|CK068170
EST:     CAGTGGCAAGGAGGATGCAGCCAACAACTTTGCCCGTGGTCACTACACCA                         TTGGCAAGGAGATTGTTGATCTGTGCCTTGACCGCATCAGGAAGCTTGCCG
genomic: CAGTGGCAAGGAGGATGCAGCCAACAACTTTGCCCGTGGTCACTACACCAgtaagttcca ... ttcgtttcagTTGGCAAGGAGATTGTTGATCTGTGCCTTGACCGCATCAGGAAGCTTGCCG
EST: gi|29659209|gb|CB655484.1|CB655484
EST:     CAGTGGCAAGGAGGATGCAGCCAACAACTTTGCCCGTGGTCACTACACCA                         TTGGCAAGGAGATTGTTGATCTGTGCCTTGACCGCATCAGGAAGCTTGCCG
genomic: CAGTGGCAAGGAGGATGCAGCCAACAACTTTGCCCGTGGTCACTACACCAgtaagttcca ... ttcgtttcagTTGGCAAGGAGATTGTTGATCTGTGCCTTGACCGCATCAGGAAGCTTGCCG
EST: gi|29641878|gb|CB646885.1|CB646885
EST:     CAGTGGCAAGGAGGATGCAGCCAACAACTTTGCCCGTGGTCACTACACCA                         TTGGCAAGGAGATTGTTGATCTGTGCCTTGACCGCATCAGGAAGCTTGCCG
genomic: CAGTGGCAAGGAGGATGCAGCCAACAACTTTGCCCGTGGTCACTACACCAgtaagttcca ... ttcgtttcagTTGGCAAGGAGATTGTTGATCTGTGCCTTGACCGCATCAGGAAGCTTGCCG
EST: gi|58604790|gb|CK015318.1|CK015318
EST:     GGCAAGGAGGATGCAGCCAACAACTTTGCCCGTGGTCACTACACCA                         TTGGCAAGGAGATGGTTGATCTGTGCCTTGACCGCATCAGGAAGCTTGCCG
genomic: GGCAAGGAGGATGCAGCCAACAACTTTGCCCGTGGTCACTACACCAgtaagttcca ... ttcgtttcagTTGGCAAGGAGATTGTTGATCTGTGCCTTGACCGCATCAGGAAGCTTGCCG
EST: gi|396941480|gb|HO188689.1|HO188689
EST:     CAGTGGCAAGGAGGATGCAGCCAACAACTTTGCCCGTGGTCACTACACCA                         TTGGCAAGGAGATTGTTGATCTGTGCCTTGACCGCATCAGGAAGCTTGCCG
genomic: CAGTGGCAAGGAGGATGCAGCCAACAACTTTGCCCGTGGTCACTACACCAgtaagttcca ... ttcgtttcagTTGGCAAGGAGATTGTTGATCTGTGCCTTGACCGCATCAGGAAGCTTGCCG
EST: gi|58666482|gb|CK055168.1|CK055168
EST:     CAGTGGCAAGGAGGATGCAGCCAACAACTTTGCCCGTGGTCACTACACCA                         TTGGCAAGGAGATTGTTGATCTGTGCCTTGACCGCATCAGGAAGCTTGCCG
genomic: CAGTGGCAAGGAGGATGCAGCCAACAACTTTGCCCGTGGTCACTACACCAgtaagttcca ... ttcgtttcagTTGGCAAGGAGATTGTTGATCTGTGCCTTGACCGCATCAGGAAGCTTGCCG
EST: gi|29667402|gb|CB663677.1|CB663677
EST:     CAGTGGCAAGGAGGATGCAGCCAACAACTTTGCCCGTGGTCACTACACCA                         TTGGCAAGGAGATTGTTGATCTGTGCCTTGACCGCATCAGGAAGCTTGCCG
genomic: CAGTGGCAAGGAGGATGCAGCCAACAACTTTGCCCGTGGTCACTACACCAgtaagttcca ... ttcgtttcagTTGGCAAGGAGATTGTTGATCTGTGCCTTGACCGCATCAGGAAGCTTGCCG
EST: gi|571565|gb|D41076.1|D41076
EST:     CAGTGGCAAGGAGGATGCAGCCAACAACTTTGCCCGTGGTCACTACACCA                         TTGGCAAGGAGATTGTTGATCTGTGCCTTGACCGCATCAGGAAGCTTGCCG
genomic: CAGTGGCAAGGAGGATGCAGCCAACAACTTTGCCCGTGGTCACTACACCAgtaagttcca ... ttcgtttcagTTGGCAAGGAGATTGTTGATCTGTGCCTTGACCGCATCAGGAAGCTTGCCG
EST: gi|29626537|gb|CB631548.1|CB631548
EST:     CAGTGGCAAGGAGGATGCAGCCAACAACTTTGCCCGTGGTCACTACACCA                         TTGGCAAGGAGATTGTTGATCTGTGCCTTGACCGCATCAGGAAGCTTGCCG
genomic: CAGTGGCAAGGAGGATGCAGCCAACAACTTTGCCCGTGGTCACTACACCAgtaagttcca ... ttcgtttcagTTGGCAAGGAGATTGTTGATCTGTGCCTTGACCGCATCAGGAAGCTTGCCG
EST: gi|58597602|gb|CK008130.1|CK008130
EST:     GGATGCAGCCAACAACTTTGCCCGTGGTCACTACACCA                         TTGGCAAGGAGATTGTTGATCTGTGCCTTGACCGCATCAGGAAGCTTGCCG
genomic: GGATGCAGCCAACAACTTTGCCCGTGGTCACTACACCAgtaagttcca ... ttcgtttcagTTGGCAAGGAGATTGTTGATCTGTGCCTTGACCGCATCAGGAAGCTTGCCG
EST: gi|300215735|gb|HO088361.1|HO088361
EST:     CAGTGGCAAGGAGGATGCAGCCAACAACTTTGCCCGTGGTCACTACACCA                         TTGGCAAGGAGATTGTTGATCTGTGCCTTGACCGCATCAGGAAGCTTGCCG
genomic: CAGTGGCAAGGAGGATGCAGCCAACAACTTTGCCCGTGGTCACTACACCAgtaagttcca ... ttcgtttcagTTGGCAAGGAGATTGTTGATCTGTGCCTTGACCGCATCAGGAAGCTTGCCG
EST: gi|58658785|gb|CK047465.1|CK047465
EST:     CAGTGGCAAGGAGGATGCAGCCAACAACTTTGCCCGTGGTCACTACACCA                         TGGGCGAGGAGATTGTTGATCTGTGCCTTGACCGCATCAGGAAGCTTGCCG
genomic: CAGTGGCAAGGAGGATGCAGCCAACAACTTTGCCCGTGGTCACTACACCAgtaagttcca ... ttcgtttcagTTGGCAAGGAGATTGTTGATCTGTGCCTTGACCGCATCAGGAAGCTTGCCG
EST: gi|58680050|gb|CK068737.1|CK068737
EST:     CAGTGGCAAGGAGGATGCAGCCAACAACTTTGCCCGTGGTCACTACACCA                         TTGGCAAGGAGATTGTTGATCTGTGCCTTGACCGCATCAGGAAGCTTGCCG
genomic: CAGTGGCAAGGAGGATGCAGCCAACAACTTTGCCCGTGGTCACTACACCAgtaagttcca ... ttcgtttcagTTGGCAAGGAGATTGTTGATCTGTGCCTTGACCGCATCAGGAAGCTTGCCG
EST: gi|58679814|gb|CK068501.1|CK068501
EST:     CAGTGGCAAGGAGGATGCAGCCAACAACTTTGCCCGTGGTCACTACACCA                         TTGGCAAGGAGATTGTTGATCTGTGCCTTGACCGCATCAGGAAGCTTGCCG
genomic: CAGTGGCAAGGAGGATGCAGCCAACAACTTTGCCCGTGGTCACTACACCAgtaagttcca ... ttcgtttcagTTGGCAAGGAGATTGTTGATCTGTGCCTTGACCGCATCAGGAAGCTTGCCG
EST: gi|58602793|gb|CK013321.1|CK013321
EST:     GGAGGATGCAGCCAACAACGTTTGCCCGTGGTCACTACACCA                         TTGGCAAGGAGATTGTTGATCTGTGCCTTGACCGCATCAGGAAGCTTGCC
genomic: GGAGGATGCAGCCAACAAC-TTTGCCCGTGGTCACTACACCAgtaagttcca ... ttcgtttcagTTGGCAAGGAGATTGTTGATCTGTGCCTTGACCGCATCAGGAAGCTTGCC
EST: gi|29627976|gb|CB632987.1|CB632987
EST:     CAGTGGCAAGGAGGATGCAGCCAACAACTTTGCCCGTGGTCACTACACCA                         TTGGCAAGGAGATTGTTGATCTGTGCCTTGACCGCATCAGGAAGCTTGCCG
genomic: CAGTGGCAAGGAGGATGCAGCCAACAACTTTGCCCGTGGTCACTACACCAgtaagttcca ... ttcgtttcagTTGGCAAGGAGATTGTTGATCTGTGCCTTGACCGCATCAGGAAGCTTGCCG
EST: gi|29659126|gb|CB655401.1|CB655401
EST:     CAGTGGCAAGGAGGATGCAGCCAACAACTTTGCCCGTGGTCACTACACCA                         TTGGCAAGGAGATTGTTGATCTGTGCCTTGACCGCATCAGGAAGCTTGCCG
genomic: CAGTGGCAAGGAGGATGCAGCCAACAACTTTGCCCGTGGTCACTACACCAgtaagttcca ... ttcgtttcagTTGGCAAGGAGATTGTTGATCTGTGCCTTGACCGCATCAGGAAGCTTGCCG
EST: gi|58663670|gb|CK052356.1|CK052356
EST:     CAGTGGCAAGGAGGATGCAGCCAACAACTTTGCCCGTGGTCACTACACCA                         TTGGCAAGGAGATTGTTGATCTGTGCCTTGACCGCATCAGGAAGCTTGCCG
genomic: CAGTGGCAAGGAGGATGCAGCCAACAACTTTGCCCGTGGTCACTACACCAgtaagttcca ... ttcgtttcagTTGGCAAGGAGATTGTTGATCTGTGCCTTGACCGCATCAGGAAGCTTGCCG
EST: gi|58659346|gb|CK048026.1|CK048026
EST:     CAGTGGCAAGGAGGATGCAGCCAACAACTTTGCCCGTGGTCACTACACCG                         TGTGGCAAGGAGATTGTTGATCTGTGCCTTGACCGCATCAGGAAGCTTGCC
genomic: CAGTGGCAAGGAGGATGCAGCCAACAACTTTGCCCGTGGTCACTACACCAgtaagttcca ... ttcgtttcagT-TGGCAAGGAGATTGTTGATCTGTGCCTTGACCGCATCAGGAAGCTTGCC
EST: gi|396941103|gb|HO188312.1|HO188312
EST:     CAGTGGCAAGGAGGATGCAGCCAACAACTTTGCCCGTGGTCACTACACCA                         TTGGCAAGGAGATTGTTGATCTGTGCCTTGACCGCATCAGGAAGCTTGCCG
genomic: CAGTGGCAAGGAGGATGCAGCCAACAACTTTGCCCGTGGTCACTACACCAgtaagttcca ... ttcgtttcagTTGGCAAGGAGATTGTTGATCTGTGCCTTGACCGCATCAGGAAGCTTGCCG
EST: gi|29687066|gb|CB683341.1|CB683341
EST:     CAGTGGCAAGGAGGATGCAGCCAACAACTTTGCCCGTGGTCACTACACCA                         TTGGCAAGGAGATTGTTGATCTGTGCCTTGACCGCATCAGGAAGCTTGCCG
genomic: CAGTGGCAAGGAGGATGCAGCCAACAACTTTGCCCGTGGTCACTACACCAgtaagttcca ... ttcgtttcagTTGGCAAGGAGATTGTTGATCTGTGCCTTGACCGCATCAGGAAGCTTGCCG
EST: gi|58612443|gb|CK040155.1|CK040155
EST:     CAGTGGCAAGGAGGATGCAGCCAACAACTTTGCCCGTGGTCACTACACCA                         TTGGCAAGGAGATTGTTGATCTGTGCCTTGACCGCATCAGGAAGCTTGCCG
genomic: CAGTGGCAAGGAGGATGCAGCCAACAACTTTGCCCGTGGTCACTACACCAgtaagttcca ... ttcgtttcagTTGGCAAGGAGATTGTTGATCTGTGCCTTGACCGCATCAGGAAGCTTGCCG
EST: gi|117239276|gb|CT848207.1|CT848207
EST:     CAGTGGCAAGGAGGATGCAGCCAACAACTTTGCCCGTGGTCACTACACCA                         TTGGCAAGGAGATTGTTGATCTGTGCCTTGACCGCATCAGGAAGCTTGCCG
genomic: CAGTGGCAAGGAGGATGCAGCCAACAACTTTGCCCGTGGTCACTACACCAgtaagttcca ... ttcgtttcagTTGGCAAGGAGATTGTTGATCTGTGCCTTGACCGCATCAGGAAGCTTGCCG
EST: gi|58664575|gb|CK053261.1|CK053261
EST:     CAGTGGCAAGGAGGATGCAGCCAACAACTTTGCCCGTGGTCACTACACCA                         TTGGCAAGGAGATTGTTGATCTGTGCCTTGACCGCATCAGGAAGCTTGCCG
genomic: CAGTGGCAAGGAGGATGCAGCCAACAACTTTGCCCGTGGTCACTACACCAgtaagttcca ... ttcgtttcagTTGGCAAGGAGATTGTTGATCTGTGCCTTGACCGCATCAGGAAGCTTGCCG
EST: gi|58695742|gb|CK084429.1|CK084429
EST:     CCAACAACTTTGCCCGTGGTCACTACACCA                         TTGGCAAGGAGATTGTTGATCTGTGCCTTGACCGCATCAGGAAGCTTGCCG
genomic: CCAACAACTTTGCCCGTGGTCACTACACCAgtaagttcca ... ttcgtttcagTTGGCAAGGAGATTGTTGATCTGTGCCTTGACCGCATCAGGAAGCTTGCCG
EST: gi|29643387|gb|CB648394.1|CB648394
EST:     CAGTGGCAAGGAGGATGCAGCCAACAACTTTGCCCGTGGTCACTACACCA                         TTGGCAAGGAGATTGTTGATCTGTGCCTTGACCGCATCAGGAAGCTTGCCG
genomic: CAGTGGCAAGGAGGATGCAGCCAACAACTTTGCCCGTGGTCACTACACCAgtaagttcca ... ttcgtttcagTTGGCAAGGAGATTGTTGATCTGTGCCTTGACCGCATCAGGAAGCTTGCCG
EST: gi|58684123|gb|CK072810.1|CK072810
EST:     CAGTGGCAAGGAGGATGCAGCCAACAACTTTGCCCGTGGTCACTACACCA                         TTGGCAAGGAGATTGTTGATCTGTGCCTTGACCGCATCAGGAAGCTTGCCG
genomic: CAGTGGCAAGGAGGATGCAGCCAACAACTTTGCCCGTGGTCACTACACCAgtaagttcca ... ttcgtttcagTTGGCAAGGAGATTGTTGATCTGTGCCTTGACCGCATCAGGAAGCTTGCCG
EST: gi|29615252|gb|CB620264.1|CB620264
EST:     CAGTGGCAAGGAGGATGCAGCCAACAACTTTGCCCGTGGTCACTACACCA                         TTGGCAAGGAGATTGTTGATCTGTGCCTTGACCGCATCAGGAAGCTTGCCG
genomic: CAGTGGCAAGGAGGATGCAGCCAACAACTTTGCCCGTGGTCACTACACCAgtaagttcca ... ttcgtttcagTTGGCAAGGAGATTGTTGATCTGTGCCTTGACCGCATCAGGAAGCTTGCCG
EST: gi|58661612|gb|CK050292.1|CK050292
EST:     CAGTGGCAAGGAGGATGCAGCCAACAACTTTGCCCGTGGTCACTAGGCCA                         TTGGCAAGGAGATTGTTGATCTGTGCCTTGACCGCATCAGGAAGCTTGCCG
genomic: CAGTGGCAAGGAGGATGCAGCCAACAACTTTGCCCGTGGTCACTACACCAgtaagttcca ... ttcgtttcagTTGGCAAGGAGATTGTTGATCTGTGCCTTGACCGCATCAGGAAGCTTGCCG
EST: gi|4880942|gb|AU065241.1|AU065241
EST:     CAGTGGCAAGGAGGATGCAGCCAACAACTTTGCCCGTGGTCACTACACCA                         TTGGCAAGGAGATTGTTGATCTGTGCCTTGACCGCATCAGGAAGCTTGCCG
genomic: CAGTGGCAAGGAGGATGCAGCCAACAACTTTGCCCGTGGTCACTACACCAgtaagttcca ... ttcgtttcagTTGGCAAGGAGATTGTTGATCTGTGCCTTGACCGCATCAGGAAGCTTGCCG
EST: gi|58663178|gb|CK051864.1|CK051864
EST:     CAGTGGCAAGGAGGATGCAGCCAACAACTTTGCCCGTGGTCACTACACCA                         TTGGCAAGGAGATTGTTGATCTGTGCCTTGACCGCATCAGGAAGCTTGCCG
genomic: CAGTGGCAAGGAGGATGCAGCCAACAACTTTGCCCGTGGTCACTACACCAgtaagttcca ... ttcgtttcagTTGGCAAGGAGATTGTTGATCTGTGCCTTGACCGCATCAGGAAGCTTGCCG
EST: gi|29646061|gb|CB651068.1|CB651068
EST:     CAGTGGCAAGGAGGATGCAGCCAACAACTTTGCCCGTGGTCACTACACCA                         TTGGCAAGGAGATTGTTGATCTGTGCCTTGACCGCATCAGGAAGCTTGCCG
genomic: CAGTGGCAAGGAGGATGCAGCCAACAACTTTGCCCGTGGTCACTACACCAgtaagttcca ... ttcgtttcagTTGGCAAGGAGATTGTTGATCTGTGCCTTGACCGCATCAGGAAGCTTGCCG
EST: gi|300216142|gb|HO087927.1|HO087927
EST:     CAGTGGCAAGGAGGATGCAGCCAACAACTTTGCCCGTGGTCACTACACCA                         TTGGCAAGGAGATTGTTGATCTGTGCCTTGACCGCATCAGGAAGCTTGCCG
genomic: CAGTGGCAAGGAGGATGCAGCCAACAACTTTGCCCGTGGTCACTACACCAgtaagttcca ... ttcgtttcagTTGGCAAGGAGATTGTTGATCTGTGCCTTGACCGCATCAGGAAGCTTGCCG
EST: gi|300215750|gb|HO088376.1|HO088376
EST:     CAGTGGCAAGGAGGATGCAGCCAACAACTTTGCCCGTGGTCACTACACCA                         TTGGCAAGGAGATTGTTGATCTGTGCCTTGACCGCATCAGGAAGCTTGCCG
genomic: CAGTGGCAAGGAGGATGCAGCCAACAACTTTGCCCGTGGTCACTACACCAgtaagttcca ... ttcgtttcagTTGGCAAGGAGATTGTTGATCTGTGCCTTGACCGCATCAGGAAGCTTGCCG
EST: gi|58595544|gb|CK006072.1|CK006072
EST:     CAGTGGCAAGGAGGATGCAGCCAACAACTTTGCCCGTGGTCACTACACCA                         TTGGCAAGGAGATTGTTGATCTGTGCCTTGACCGCATCAGGAAGCTTGCCG
genomic: CAGTGGCAAGGAGGATGCAGCCAACAACTTTGCCCGTGGTCACTACACCAgtaagttcca ... ttcgtttcagTTGGCAAGGAGATTGTTGATCTGTGCCTTGACCGCATCAGGAAGCTTGCCG
EST: gi|58682813|gb|CK071500.1|CK071500
EST:     CAGTGGCAAGGAGGATGCAGCCAACAACTTTGCCCGTGGTCACTACACCA                         TTGGCAAGGAGATTGTTGATCTGTGCCTTGACCGCATCAGGAAGCTTGCCG
genomic: CAGTGGCAAGGAGGATGCAGCCAACAACTTTGCCCGTGGTCACTACACCAgtaagttcca ... ttcgtttcagTTGGCAAGGAGATTGTTGATCTGTGCCTTGACCGCATCAGGAAGCTTGCCG
EST: gi|58684765|gb|CK073452.1|CK073452
EST:     CAGTGGCGAGGAGGATGCAGCCAACAACTTTGCCCGTGGTCACTACACCA                         TTGGCAAGGAGATTGTTGATCTGTGCCTTGACCGCATCAGGAAGCTTGCCG
genomic: CAGTGGCAAGGAGGATGCAGCCAACAACTTTGCCCGTGGTCACTACACCAgtaagttcca ... ttcgtttcagTTGGCAAGGAGATTGTTGATCTGTGCCTTGACCGCATCAGGAAGCTTGCCG
EST: gi|58660518|gb|CK049198.1|CK049198
EST:     CAGTGGCAAGGAGGATGCAGCCAACAACTTTGCCCGTGGTCACTACACCA                         TTGGCAAGGAGATTGTTGATCTGTGCCTTGACCGCATCAGGAAGCTTGCCG
genomic: CAGTGGCAAGGAGGATGCAGCCAACAACTTTGCCCGTGGTCACTACACCAgtaagttcca ... ttcgtttcagTTGGCAAGGAGATTGTTGATCTGTGCCTTGACCGCATCAGGAAGCTTGCCG
EST: gi|701524|gb|D47815.1|D47815
EST:     CAGTGGCAAGGAGGATGCAGCCAACAACTTTGCCCGTGGTCACTACACCA                         TTGGCAAGGAGATTGTTGATCTGTGCCTTGACCGCATCAGGAAGCTTGCCG
genomic: CAGTGGCAAGGAGGATGCAGCCAACAACTTTGCCCGTGGTCACTACACCAgtaagttcca ... ttcgtttcagTTGGCAAGGAGATTGTTGATCTGTGCCTTGACCGCATCAGGAAGCTTGCCG
EST: gi|58604707|gb|CK015235.1|CK015235
EST:     CAGTGGCAAGGAGGATGCAGCCAACAACTTTGCCCGTGGTCACTACACCA                         TTGGCAAGGAGATTGTTGATCTGTGCCTTGACCGCATCAGGAAGCTTGCCG
genomic: CAGTGGCAAGGAGGATGCAGCCAACAACTTTGCCCGTGGTCACTACACCAgtaagttcca ... ttcgtttcagTTGGCAAGGAGATTGTTGATCTGTGCCTTGACCGCATCAGGAAGCTTGCCG
EST: gi|58682920|gb|CK071607.1|CK071607
EST:     CAGTGGCAAGGAGGATGCAGCCAACAACTTTGCCCGTGGTCACTACACCA                         TTGGCAAGGAGATTGTTGATCTGTGCCTTGACCGCATCAGGAAGCTTGCCG
genomic: CAGTGGCAAGGAGGATGCAGCCAACAACTTTGCCCGTGGTCACTACACCAgtaagttcca ... ttcgtttcagTTGGCAAGGAGATTGTTGATCTGTGCCTTGACCGCATCAGGAAGCTTGCCG
EST: gi|300215516|gb|HO088142.1|HO088142
EST:     CAGTGGCAAGGAGGATGCAGCCAACAACTTTGCCCGTGGTCACTACACCA                         TTGGCAAGGAGATTGTTGATCTGTGCCTTGACCGCATCAGGAAGCTTGCCG
genomic: CAGTGGCAAGGAGGATGCAGCCAACAACTTTGCCCGTGGTCACTACACCAgtaagttcca ... ttcgtttcagTTGGCAAGGAGATTGTTGATCTGTGCCTTGACCGCATCAGGAAGCTTGCCG
EST: gi|4879995|gb|AU064294.1|AU064294
EST:     CAGTGGCAAGGAGGATGCAGCCAACAACTTTGCCCGTGGTCACTACACCA                         TTGGCAAGGAGATTGTTGATCTGTGCCTTGACCGCATCAGGAAGCTTGCCG
genomic: CAGTGGCAAGGAGGATGCAGCCAACAACTTTGCCCGTGGTCACTACACCAgtaagttcca ... ttcgtttcagTTGGCAAGGAGATTGTTGATCTGTGCCTTGACCGCATCAGGAAGCTTGCCG
EST: gi|29637160|gb|CB642169.1|CB642169
EST:     CAGTGGCAAGGAGGATGCAGCCAACAACTTTGCCCGTGGTCACTACACCA                         TTGGCAAGGAGATTGTTGATCTGTGCCTTGACCGCATCAGGAAGCTTGCCG
genomic: CAGTGGCAAGGAGGATGCAGCCAACAACTTTGCCCGTGGTCACTACACCAgtaagttcca ... ttcgtttcagTTGGCAAGGAGATTGTTGATCTGTGCCTTGACCGCATCAGGAAGCTTGCCG
EST: gi|29638508|gb|CB643517.1|CB643517
EST:     CAGTGGCAAGGAGGATGCAGCCAACAACTTTGCCCGTGGTCACTACACCA                         TTGGCAAGGAGATTGTTGATCTGTGCCTTGACCGCATCAGGAAGCTTGCCG
genomic: CAGTGGCAAGGAGGATGCAGCCAACAACTTTGCCCGTGGTCACTACACCAgtaagttcca ... ttcgtttcagTTGGCAAGGAGATTGTTGATCTGTGCCTTGACCGCATCAGGAAGCTTGCCG
EST: gi|58683503|gb|CK072190.1|CK072190
EST:     CAGTGGCAA-GAGGATGCAGCCAACAACTTTGCCCGTGGTCACTACACCA                         TTGGCAAGGA-ATTGTTGATCTGTGCCTTGACCGCATCAGGAAGCTTGCCG
genomic: CAGTGGCAAGGAGGATGCAGCCAACAACTTTGCCCGTGGTCACTACACCAgtaagttcca ... ttcgtttcagTTGGCAAGGAGATTGTTGATCTGTGCCTTGACCGCATCAGGAAGCTTGCCG
EST: gi|3763809|gb|AU030561.1|AU030561
EST:     GGAGGATGCAGCCAACAACTTTGCCNGTGGTCACTACACNA                         TTGGCAAGGAGATTGTTGATCTGTGCCTTGACCGCATCAGGAAGCTTGNCG
genomic: GGAGGATGCAGCCAACAACTTTGCCCGTGGTCACTACACCAgtaagttcca ... ttcgtttcagTTGGCAAGGAGATTGTTGATCTGTGCCTTGACCGCATCAGGAAGCTTGCCG
EST: gi|300216013|gb|HO088639.1|HO088639
EST:     CAGTGGCAAGGAGGATGCAGCCAACAACTTTGCCCGTGGTCACTACACCA                         TTGGCAAGGAGATTGTTGATCTGTGCCTTGACCGCATCAGGAAGCTTGCCG
genomic: CAGTGGCAAGGAGGATGCAGCCAACAACTTTGCCCGTGGTCACTACACCAgtaagttcca ... ttcgtttcagTTGGCAAGGAGATTGTTGATCTGTGCCTTGACCGCATCAGGAAGCTTGCCG
EST: gi|701487|gb|D47778.1|D47778
EST:     CAGTGGCAAGGAGGATGCAGCCAACAACTTTGCCCGTGGTCACTACACCA                         TTGGCAAGGAGATTGTTGATCTGTGCCTTGACCGCATCAGGAAGCTTGCCG
genomic: CAGTGGCAAGGAGGATGCAGCCAACAACTTTGCCCGTGGTCACTACACCAgtaagttcca ... ttcgtttcagTTGGCAAGGAGATTGTTGATCTGTGCCTTGACCGCATCAGGAAGCTTGCCG
EST: gi|29676943|gb|CB673218.1|CB673218
EST:     CAGTGGCAAGGAGGATGCAGCCAACAACTTTGCCCGTGGTCACTACACCA                         TTGGCAAGGAGATTGTTGATCTGTGCCTTGACCGCATCAGGAAGCTTGCCG
genomic: CAGTGGCAAGGAGGATGCAGCCAACAACTTTGCCCGTGGTCACTACACCAgtaagttcca ... ttcgtttcagTTGGCAAGGAGATTGTTGATCTGTGCCTTGACCGCATCAGGAAGCTTGCCG
EST: gi|58683584|gb|CK072271.1|CK072271
EST:     CAGTGGCAAGGAGGATGCAGCCAACAACTTTGCCCGTGGTCACTACACCA                         TTGGCAAGGAGATTGTTGATCTGTGCCTTGACCGCATCAGGAAGCTTGCCG
genomic: CAGTGGCAAGGAGGATGCAGCCAACAACTTTGCCCGTGGTCACTACACCAgtaagttcca ... ttcgtttcagTTGGCAAGGAGATTGTTGATCTGTGCCTTGACCGCATCAGGAAGCTTGCCG
EST: gi|300215550|gb|HO088176.1|HO088176
EST:     CAGTGGCAAGGAGGATGCAGCCAACAACTTTGCCCGTGGTCACTACACCA                         TTGGCAAGGAGATTGTTGATCTGTGCCTTGACCGCATCAGGAAGCTTGCCG
genomic: CAGTGGCAAGGAGGATGCAGCCAACAACTTTGCCCGTGGTCACTACACCAgtaagttcca ... ttcgtttcagTTGGCAAGGAGATTGTTGATCTGTGCCTTGACCGCATCAGGAAGCTTGCCG
EST: gi|58663452|gb|CK052138.1|CK052138
EST:     CAGTGGCAAGGAGGATGCAGCCAACAAC-TTGCCCGTGGTCACTACACCA                         TTGGCAAGGAGA-TGTTGATCTGTGCCTTGACCGCATCAGGAAGCTTGCCG
genomic: CAGTGGCAAGGAGGATGCAGCCAACAACTTTGCCCGTGGTCACTACACCAgtaagttcca ... ttcgtttcagTTGGCAAGGAGATTGTTGATCTGTGCCTTGACCGCATCAGGAAGCTTGCCG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 75 (upstream exon), 75 (downstream exon)
Score: 1414

GAGGTGAGGACTGGTGACTACCGCCAGCTCTTCCACCCTGAGCAGCTCATCAGTGGCAAGGAGGATGCAGCCAACAACTTTGCCCGTGGTCACTACACCAgtaagttcca ... ttcgtttcagTTGGCAAGGAGATTGTTGATCTGTGCCTTGACCGCATCAGGAAGCTTGCCGACAACTGCACTGGTCTCCAGGGCTTCCTTGTGTTCAACGCTGTTGGAGG




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Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GAGGTGAGGACTGGTGACTACCGCCAGCTCTTCCACCCTGAGCAGCTCATCAGTGGCAAGGAGGATGCAGCCAACAACTTTGCCCGTGGTCACTACACCAgtaagttccatctttactactatctgttcacaatttctggaaatgtgattgtttggatgtctaacatgtggtgccgttcgtttcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGGATG