1 5' 3' | 2 5' 3' | 3 5' 3' |
CCCGCGCCGCGCTCCGGACGTCGTTCCTCGCGTCGTGCGTGTCGGCGTGCAGGGGGAGAACGACCAGCCTCGCCGACGCTGTGAGCTTCATGGGGCAAAAgtaagcctgtccaaaacatgaattgcatgttttgcgaccgcgaaacttcgaatcgaattcgggaattcgattcgcctttatgctttgtatttgaaactagcctgatacaattgtggtgattgtaatgatttgtttatgtatttatcag
species | Oryza sativa |
transcript | LOC_Os11g14180.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: AGGGGGAGAACGACCAGCCTCGCCGACGCTGTGAGCTTCATGGGGCAAAA GTTGAACGAGCGCCTTCAAGAATCCCATGGCGACGAGGTATTGAAGGCAGAEST: gi|29615164|gb|CB620177.1|CB620177
genomic: AGGGGGAGAACGACCAGCCTCGCCGACGCTGTGAGCTTCATGGGGCAAAAgtaagcctgt ... tatttatcagGTTGAACGAGCGCCTTCAAGAATCCCATGGCGACGAGGTATTGAAGGCAGA
EST: AGGGGGAGAACGACCAGCCTCGCCGACGCTGTGAGCTTCATGGGGCAAAA GTTGCACGAGCGCCTTCAAGAATCCCATGGCGACGAGGTATTGAAGGCAGAEST: gi|58680481|gb|CK069168.1|CK069168
genomic: AGGGGGAGAACGACCAGCCTCGCCGACGCTGTGAGCTTCATGGGGCAAAAgtaagcctgt ... tatttatcagGTTGAACGAGCGCCTTCAAGAATCCCATGGCGACGAGGTATTGAAGGCAGA
EST: AGGGGGAGAACGACCAGCCTCGCCGACGCTGTGAGCTTCATGGGGCAAAA GTTGCACGAGCGCCTTCAAGAATCCCATGGCGACGAGGTATTGAAGGCAGAEST: gi|58611568|gb|CK039280.1|CK039280
genomic: AGGGGGAGAACGACCAGCCTCGCCGACGCTGTGAGCTTCATGGGGCAAAAgtaagcctgt ... tatttatcagGTTGAACGAGCGCCTTCAAGAATCCCATGGCGACGAGGTATTGAAGGCAGA
EST: AGGGGGAGAACGACCAGCCTCGCCGACGCTGTGAGCTTCATGGGGCAAAA GTTGCACGAGCGCCTTCAAGAATCCCATGGCGACGAGGTATTGAAGGCAGA
genomic: AGGGGGAGAACGACCAGCCTCGCCGACGCTGTGAGCTTCATGGGGCAAAAgtaagcctgt ... tatttatcagGTTGAACGAGCGCCTTCAAGAATCCCATGGCGACGAGGTATTGAAGGCAGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCCGCGCCGCGCTCCGGACGTCGTTCCTCGCGTCGTGCGTGTCGGCGTGCAGGGGGAGAACGACCAGCCTCGCCGACGCTGTGAGCTTCATGGGGCAAAAgtaagcctgtccaaaacatgaattgcatgttttgcgaccgcgaaacttcgaatcgaattcgggaattcgattcgcctttatgctttgtatttgaaactagcctgatacaattgtggtgattgtaatgatttgtttatgtatttatcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT