1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
ATATCATTGGCAAAGGCAGCCTGCACATTTGCCTTGAAGGGGTTGAAGAATTGGATGAAACCTGAGAAGgtagtactactatttcttttgcatgttcagtctccagtactatccattaaaagtttattcttttgttgatcagatgctaatcatgctaaccctcataaatgatgatcag
species | Oryza sativa |
transcript | LOC_Os11g08300.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: CCTGCACATTTGCCTTGAAGGGGTTGAAGAATTGGATGAAACCTGAGAAG GTACCTGCCGCCCTCACTACATTCCCATCAACTGCACAAATTGTGTCAGAGEST: gi|29660175|gb|CB656450.1|CB656450
genomic: CCTGCACATTTGCCTTGAAGGGGTTGAAGAATTGGATGAAACCTGAGAAGgtagtactac ... tgatgatcagGTACCTGCCGCCCTCACTACATTCCCATCAACTGCACAAATTGTGTCAGAG
EST: CTGCACATTTGCCTTGAAGGGGTTGAAGAATTGGATGAAACACTGAGAAG GTACCTGCCGCCCTCACTACATTCCCATCAACTGCACAAATTGTGTCAGAEST: gi|88433183|gb|CI569852.1|CI569852
genomic: CTGCACATTTGCCTTGAAGGGGTTGAAGAATTGGATGAAAC-CTGAGAAGgtagtactac ... tgatgatcagGTACCTGCCGCCCTCACTACATTCCCATCAACTGCACAAATTGTGTCAGA
EST: GCTGCACATTTGCCTTGAAGGGGTTGAAGAATTGGATGAAACCTGAGAAG GTACCTGCCGCCCTCACTACATTCC-ATCAAATGCGCAAATTGTGTCAGAGEST: gi|58695219|gb|CK083906.1|CK083906
genomic: CCTGCACATTTGCCTTGAAGGGGTTGAAGAATTGGATGAAACCTGAGAAGgtagtactac ... tgatgatcagGTACCTGCCGCCCTCACTACATTCCCATCAACTGCACAAATTGTGTCAGAG
EST: CCTGCACATTTGCCTTGAAGGGGTTGAAGAATTGGATGAAACCTGAGAAG GTACCTGCCGCCCTCACGACATTCCCATCAACTGCACAAATTGTGTCAGAGEST: gi|58604207|gb|CK014735.1|CK014735
genomic: CCTGCACATTTGCCTTGAAGGGGTTGAAGAATTGGATGAAACCTGAGAAGgtagtactac ... tgatgatcagGTACCTGCCGCCCTCACTACATTCCCATCAACTGCACAAATTGTGTCAGAG
EST: CCTGCACATTTGCCTTGAAGGGGTTGAAGAATTGGATGAAACCTGAGAAG GTACCTGCCGCCCTCACGACATTCCCATCAACTGCACAAATTGTGTCAGAGEST: gi|29645892|gb|CB650899.1|CB650899
genomic: CCTGCACATTTGCCTTGAAGGGGTTGAAGAATTGGATGAAACCTGAGAAGgtagtactac ... tgatgatcagGTACCTGCCGCCCTCACTACATTCCCATCAACTGCACAAATTGTGTCAGAG
EST: CCTGCACATTTGCCTTGAAGGGGTTGAAGAATTGGATGAAACCTGAGAAG GTACCTGCCGCCCTCACTACATTCCCATCAACTGCACAAATTGTGTCAGAGEST: gi|29643971|gb|CB648978.1|CB648978
genomic: CCTGCACATTTGCCTTGAAGGGGTTGAAGAATTGGATGAAACCTGAGAAGgtagtactac ... tgatgatcagGTACCTGCCGCCCTCACTACATTCCCATCAACTGCACAAATTGTGTCAGAG
EST: CCTGCACATTTGCCTTGAAGGGGTTGAAGAATTGGATGAAACCTGAGAAG GTACCTGCCGCCCTCACTACATTCCCATCAACTGCACAAATTGTGTCAGAGEST: gi|58689115|gb|CK077802.1|CK077802
genomic: CCTGCACATTTGCCTTGAAGGGGTTGAAGAATTGGATGAAACCTGAGAAGgtagtactac ... tgatgatcagGTACCTGCCGCCCTCACTACATTCCCATCAACTGCACAAATTGTGTCAGAG
EST: CCTGCACATTTGCCTTGAAGGGGTTGAAGAATTGGATGAAACCTGAGAAG GTACCTGCCGCCCTCACGACATTCCCATCAACTGCACAAATTGTGTCAGAGEST: gi|58691525|gb|CK080212.1|CK080212
genomic: CCTGCACATTTGCCTTGAAGGGGTTGAAGAATTGGATGAAACCTGAGAAGgtagtactac ... tgatgatcagGTACCTGCCGCCCTCACTACATTCCCATCAACTGCACAAATTGTGTCAGAG
EST: CCTGCACATTTGCCTTGAAGGGGTTGAAGAATTGGATGAAACCTGAGAAG GTACCTGCCGCCCTCACGACATTCCCATCAACTGCACAAATTGTGTCAGAGEST: gi|58695788|gb|CK084475.1|CK084475
genomic: CCTGCACATTTGCCTTGAAGGGGTTGAAGAATTGGATGAAACCTGAGAAGgtagtactac ... tgatgatcagGTACCTGCCGCCCTCACTACATTCCCATCAACTGCACAAATTGTGTCAGAG
EST: CCTGCACATTTGCCTTGAAGGGGTTGAAGAATTGGATGAAACCTGAGAAG GTACCTGCCGCCCTCACGACATTCCCATCAACTGCACAAATTGTGTCAGAGEST: gi|58690002|gb|CK078689.1|CK078689
genomic: CCTGCACATTTGCCTTGAAGGGGTTGAAGAATTGGATGAAACCTGAGAAGgtagtactac ... tgatgatcagGTACCTGCCGCCCTCACTACATTCCCATCAACTGCACAAATTGTGTCAGAG
EST: CCTGCACATTTGCCTTGAAGGGGTTGAAGAATTGGATGAAACCTGAGAAG GTACCTGCCGCCCTCACGACATTCCCATCAACTGCACAAATTGTGTCAGAGEST: gi|33675935|gb|CF304174.1|CF304174
genomic: CCTGCACATTTGCCTTGAAGGGGTTGAAGAATTGGATGAAACCTGAGAAGgtagtactac ... tgatgatcagGTACCTGCCGCCCTCACTACATTCCCATCAACTGCACAAATTGTGTCAGAG
EST: CCTGCACATTTGCCTTGAAGGGGTTGAAGAATTGGATGAAACCTGAGAAG GTACCTGCCGCCCTCACTACATTCCCATCAACTGCACAAATTGTGTCAGAGEST: gi|29630144|gb|CB635153.1|CB635153
genomic: CCTGCACATTTGCCTTGAAGGGGTTGAAGAATTGGATGAAACCTGAGAAGgtagtactac ... tgatgatcagGTACCTGCCGCCCTCACTACATTCCCATCAACTGCACAAATTGTGTCAGAG
EST: CCTGCACATTTGCCTTGAAGGGGTTGAAGAATTGGATGAAACCTGAGAAG GTACCTGCCGCCCTCACGACATTCCCATCAACTGCACAAATTGTGTCAGAGEST: gi|29681705|gb|CB677980.1|CB677980
genomic: CCTGCACATTTGCCTTGAAGGGGTTGAAGAATTGGATGAAACCTGAGAAGgtagtactac ... tgatgatcagGTACCTGCCGCCCTCACTACATTCCCATCAACTGCACAAATTGTGTCAGAG
EST: CCTGCACATTTGCCTTGAAGGGGTTGAAGAATTGGATGAAACCTGAGAAG GTACCTGCCGCCCTCACTACATTCCCATCAACTGCACAAATTGTGTCAGAGEST: gi|33800254|gb|CF325992.1|CF325992
genomic: CCTGCACATTTGCCTTGAAGGGGTTGAAGAATTGGATGAAACCTGAGAAGgtagtactac ... tgatgatcagGTACCTGCCGCCCTCACTACATTCCCATCAACTGCACAAATTGTGTCAGAG
EST: CCTGCACATTTGCCTTGAAGGGGTTGAAGAATTGGATGAAACCTGAGAAG GTACCTGCCGCCCTCACTACATTCCCATCAACTGCACAATTTGTGTCAGAG
genomic: CCTGCACATTTGCCTTGAAGGGGTTGAAGAATTGGATGAAACCTGAGAAGgtagtactac ... tgatgatcagGTACCTGCCGCCCTCACTACATTCCCATCAACTGCACAAATTGTGTCAGAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATATCATTGGCAAAGGCAGCCTGCACATTTGCCTTGAAGGGGTTGAAGAATTGGATGAAACCTGAGAAGgtagtactactatttcttttgcatgttcagtctccagtactatccattaaaagtttattcttttgttgatcagatgctaatcatgctaaccctcataaatgatgatcag
- - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - TGAAGA