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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTGACCTAAGACACAAGGAGCTAGAACTTGAGATTAAGATAAAGGGCAATGCTAATCATCCATGATCTTTGTTCTGTTAGCACTTCATTTCGCAATATGgtaagcaaatggactagattttcagttacttttactaaaaaatgctcaatgtttataatttgggtagcttcttgtgggagttttttcatgacaagttttt...

Basic information

species Oryza sativa
transcript LOC_Os11g06410.3
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88467437|gb|CI537079.1|CI537079
EST:     TGCTAATCATCCATGATCTTTGTTCTGTTAGCACTTCATTTCGCAATATG                         GTTGCAGATCAATTCAATTCAGGACCGTGTTTATGCAAGATGGTAGAGGTG
genomic: TGCTAATCATCCATGATCTTTGTTCTGTTAGCACTTCATTTCGCAATATGgtaagcaaat ... ttaatttcagGTTGCAGATCAATTCAATTCAGGACCGTGTTTATGCAAGATGGTAGAGGTG
EST: gi|88411369|gb|CI518893.1|CI518893
EST:     TGCTAATCATCCATGATCTTTGTTCTGTTAGCACTTCATTTCGCAATATG                         GTTGCAGATCAATTCAATTCAGGACCGTGTTTATGCAAGATGGTAGAGGTG
genomic: TGCTAATCATCCATGATCTTTGTTCTGTTAGCACTTCATTTCGCAATATGgtaagcaaat ... ttaatttcagGTTGCAGATCAATTCAATTCAGGACCGTGTTTATGCAAGATGGTAGAGGTG
EST: gi|89185091|gb|CI049637.1|CI049637
EST:     TGCTAATCATCCATGATCTTTGTTCTGTTAGCACTTCATTTCGCAATATG                         GTTGCAGATCAATTCAATTCAGGACCGTGTTTATGCAAGATGGTAGAGGTG
genomic: TGCTAATCATCCATGATCTTTGTTCTGTTAGCACTTCATTTCGCAATATGgtaagcaaat ... ttaatttcagGTTGCAGATCAATTCAATTCAGGACCGTGTTTATGCAAGATGGTAGAGGTG
EST: gi|9864879|gb|AU100629.1|AU100629
EST:     TGCTAATCATCCANGATCTTTGTTCTGTTAGCACTTCATTTCGCAATATG                         GTTGCAGATCAATTCAATTCAGGACCGTGTTTATGCAAGATGGTAGAGGTG
genomic: TGCTAATCATCCATGATCTTTGTTCTGTTAGCACTTCATTTCGCAATATGgtaagcaaat ... ttaatttcagGTTGCAGATCAATTCAATTCAGGACCGTGTTTATGCAAGATGGTAGAGGTG
EST: gi|88478444|gb|CI415715.1|CI415715
EST:     TGCTAATCATCCATGATCTTTGTTCTGTTAGCACTTCATTTCGCAATATG                         GTTGCAGATCAATTCAATTCAGGACCGTGTTTATGCAAGATGGTAGAGGTG
genomic: TGCTAATCATCCATGATCTTTGTTCTGTTAGCACTTCATTTCGCAATATGgtaagcaaat ... ttaatttcagGTTGCAGATCAATTCAATTCAGGACCGTGTTTATGCAAGATGGTAGAGGTG
EST: gi|89185434|gb|CI051762.1|CI051762
EST:     TGCTAATCATCCATGATCTTTGTTCTGTTAGCACTTCATTTCGCAATATG                         GTTGCAGATCAATTCAATTCAGGACCGTGTTTATGCAAGATGGTAGAGGTG
genomic: TGCTAATCATCCATGATCTTTGTTCTGTTAGCACTTCATTTCGCAATATGgtaagcaaat ... ttaatttcagGTTGCAGATCAATTCAATTCAGGACCGTGTTTATGCAAGATGGTAGAGGTG
EST: gi|3761970|gb|C99218.1|C99218
EST:     TGCTAATCATCCATGATCTTTGTTCTGTTAGCACTTCATTTCGCAATATG                         GTTGCAGATCAATTCAATTCAGGACCGTGTTTATGCAAGATGGTAGAGGTG
genomic: TGCTAATCATCCATGATCTTTGTTCTGTTAGCACTTCATTTCGCAATATGgtaagcaaat ... ttaatttcagGTTGCAGATCAATTCAATTCAGGACCGTGTTTATGCAAGATGGTAGAGGTG