Skip to another splice site:
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 5'  3'   		2  
 5'  3'   		3  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGCGGATGAAGAACCTGTTGATCCAAAGAAGTACCTTGAGGAGCGCTGCAAGCCCCAGTGCGTAAAGCCACTCTATGAGTATGAGgtgcgtctgtgcttgctaattttcttctttggggctttattatcatgagtttcttttgggcagtgggcacatgcttcacttgatggaagtgttcattatg...

Basic information

species Oryza sativa
transcript LOC_Os11g06340.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os11g06340.1 (Oryza sativa), 5'ss of exon 2
lower sequence: AT1G15120.1 (Arabidopsis thaliana), 5'ss of exon 3
GGCGGATGAAGAACCTGTTGATCCAAAGAAGTACCTTGAGGAGCGCTGCAAGCCCCAGTGCGTAAAGCCACTCTATGAGTATGAGgtgcgtctg--tgct-tgctaatt--ttcttctttggggctttattatcatgagtttcttttgggcagtgggca-catgcttcacttgatggaagtgttcattatg--------
||| ||||| |||  |||||||||||||||||||||||||||    ||||| ||  | || || ||||||||    || ||| |||||   |||  || | |  | | |  || |   ||| |   | | | |    |   |    ||    |||   | |||  ||    ||||  |||  ||  || ||        
GGCAGATGATGAAGTTGTTGATCCAAAGAAGTACCTTGAGGAATCTTGCAAACCAAAATGTGTGAAGCCACTTCTCGAATATCAGgtgaaactggttgatgttgtgactaattatgaattgtgttataagttttgacacagtgccatgttttgtgaagatcattgtttgactgatacaaggcttgtttgtggttctcag

upper sequence: LOC_Os11g06340.1 (Oryza sativa), 5'ss of exon 2
lower sequence: Vv18s0072g00810.t01 (Vitis vinifera), 5'ss of exon 3
GGCGGATGAAGAACCTGTTGATCCAAAGAAGTACCTTGAGGAGCGCTGCAAGCCCCAGTGCGTAAAGCCACTCTATGAGTATGAGgtgcgtctgtgcttgctaattttcttctttggggctttattatcatgagtttcttttgggcagtgggcacatgcttcact--tgatggaagtgttcattatg---------
|||||| ||||| |||||||||||||||||||| ||||| ||    ||||||||  |||| || |      |   ||  ||||||||| |||      |  | |   ||    |||   ||  | ||   | |    |        ||   |  | | ||||| |  ||||| |  |||| | |            
GGCGGACGAAGAGCCTGTTGATCCAAAGAAGTATCTTGAAGAATCTTGCAAGCCTAAGTGTGTGAGATATTTGCGTGCATATGAGgtgagtc-----atattgagcatcggacttgcaactagaataatctaataacc------aaagcaagtccttacttcaatagtgatgaatttgtttactgaatattgcaga
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86257972|gb|CI064325.1|CI064325
EST:     TTGAGGAGCGCTGCAAGCCCCAGTGCGTAAAGCCACTCTATGAGTATGAG                         AAGTGCGTCAAGAGAGTGGAGAAGGATGATACTGGGCATAAACACTGCACT
genomic: TTGAGGAGCGCTGCAAGCCCCAGTGCGTAAAGCCACTCTATGAGTATGAGgtgcgtctgt ... tggtttgcagAAGTGCGTCAAGAGAGTGGAGAAGGATGATACTGGGCATAAACACTGCACT
EST: gi|33807503|gb|CF329630.1|CF329630
EST:     TTGAGGAGCGCTGCAAGCCCCAGTGCGTAAAGCCACTCTATGAGTATGAG                         AAGTGCGTCAAGAGAGTGGAGAAGGATGATACTGGGCATAAACACTGCACT
genomic: TTGAGGAGCGCTGCAAGCCCCAGTGCGTAAAGCCACTCTATGAGTATGAGgtgcgtctgt ... tggtttgcagAAGTGCGTCAAGAGAGTGGAGAAGGATGATACTGGGCATAAACACTGCACT
EST: gi|58589455|gb|CF987763.1|CF987763
EST:     TTGAGGAGCGCTGCAAGCCCCAGTGCGTAAAGCCGGTCTATGAGTATGAG                         AAGTGCGTCAAGAGAGTGGAGAAGGATGATACTGGGCATAAACACTGCACT
genomic: TTGAGGAGCGCTGCAAGCCCCAGTGCGTAAAGCCACTCTATGAGTATGAGgtgcgtctgt ... tggtttgcagAAGTGCGTCAAGAGAGTGGAGAAGGATGATACTGGGCATAAACACTGCACT
EST: gi|33690441|gb|CF318680.1|CF318680
EST:     TTGAGGAGCGCTGCAAGCCCCAGTGCGTAAAGCCACTCTATGAGTATGAG                         AAGTGCGTCAAGAGAGTGGAGAAGGATGATACTGGGCATAAACACTGCACT
genomic: TTGAGGAGCGCTGCAAGCCCCAGTGCGTAAAGCCACTCTATGAGTATGAGgtgcgtctgt ... tggtttgcagAAGTGCGTCAAGAGAGTGGAGAAGGATGATACTGGGCATAAACACTGCACT
EST: gi|88578860|gb|CI687815.1|CI687815
EST:     TTGAGGAGCGCTGCAAGCCCCAGTGCGTAAAGCCACTCTATGAGTATGAG                         AAGTGCGTCAAGAGAGTGGAGAAGGATGATACTGGGCATAAACACTGCACT
genomic: TTGAGGAGCGCTGCAAGCCCCAGTGCGTAAAGCCACTCTATGAGTATGAGgtgcgtctgt ... tggtttgcagAAGTGCGTCAAGAGAGTGGAGAAGGATGATACTGGGCATAAACACTGCACT
EST: gi|88237379|gb|CI237228.1|CI237228
EST:     TTGAGGAGCGCTGCAAGCCCCAGTGCGTAAAGCCACTCTATGAGTATGAG                         AAGTGCGTCAAGAGAGTGGAGAAGGATGATACTGGGCATAAACACTGCACT
genomic: TTGAGGAGCGCTGCAAGCCCCAGTGCGTAAAGCCACTCTATGAGTATGAGgtgcgtctgt ... tggtttgcagAAGTGCGTCAAGAGAGTGGAGAAGGATGATACTGGGCATAAACACTGCACT
EST: gi|86831676|gb|CI301526.1|CI301526
EST:     TTGAGGAGCGCTGCAAGCCCCAGTGCGTAAAGCCACTCTATGAGTATGAG                         AAGTGCGTCAAGAGAGTGGAGAAGGATGATACTGGGCATAAACACTGCACT
genomic: TTGAGGAGCGCTGCAAGCCCCAGTGCGTAAAGCCACTCTATGAGTATGAGgtgcgtctgt ... tggtttgcagAAGTGCGTCAAGAGAGTGGAGAAGGATGATACTGGGCATAAACACTGCACT
EST: gi|88760923|gb|CI770479.1|CI770479
EST:     TTGAGGAGCGCTGCAAGCCCCAGTGCGTAAAGCCACTCTATGAGTATGAG                         AAGTGCGTCAAGAGAGTGGAGAAGGATGATACTGGGCATAAACACTGCACT
genomic: TTGAGGAGCGCTGCAAGCCCCAGTGCGTAAAGCCACTCTATGAGTATGAGgtgcgtctgt ... tggtttgcagAAGTGCGTCAAGAGAGTGGAGAAGGATGATACTGGGCATAAACACTGCACT
EST: gi|88340112|gb|CI650559.1|CI650559
EST:     TTGAGGAGCGCTGCAAGCCCCAGTGCGTAAAGCCACTCTATGAGTATGAG                         AAGTGCGTCAAGAGAGTGGAGAAGGATGATACTGGGCATAAACACTGCACT
genomic: TTGAGGAGCGCTGCAAGCCCCAGTGCGTAAAGCCACTCTATGAGTATGAGgtgcgtctgt ... tggtttgcagAAGTGCGTCAAGAGAGTGGAGAAGGATGATACTGGGCATAAACACTGCACT
EST: gi|88394026|gb|CI684295.1|CI684295
EST:     TTGAGGAGCGCTGCAAGCCCCAGTGCGTAAAGCCACTCTATGAGTATGAG                         AAGTGCGTCAAGAGAGTGGAGAAGGATGATACTGGGCATAAACACTGCACT
genomic: TTGAGGAGCGCTGCAAGCCCCAGTGCGTAAAGCCACTCTATGAGTATGAGgtgcgtctgt ... tggtttgcagAAGTGCGTCAAGAGAGTGGAGAAGGATGATACTGGGCATAAACACTGCACT
EST: gi|88353730|gb|CI634521.1|CI634521
EST:     TTGAGGAGCGCTGCAAGCCCCAGTGCGTAAAGCCACTCTATGAGTATGAG                         AAGTGCGTCAAGAGAGTGGAGAAGGATGATACTGGGCATAAACACTGCACT
genomic: TTGAGGAGCGCTGCAAGCCCCAGTGCGTAAAGCCACTCTATGAGTATGAGgtgcgtctgt ... tggtttgcagAAGTGCGTCAAGAGAGTGGAGAAGGATGATACTGGGCATAAACACTGCACT
EST: gi|88732418|gb|CI755595.1|CI755595
EST:     TTGAGGAGCGCTGCAAGCCCCAGTGCGTAAAGCCACTCTATGAGTATGAG                         AAGTGCGTCAAGAGAGTGGAGAAGGATGATACTGGGCATAAACACTGCACT
genomic: TTGAGGAGCGCTGCAAGCCCCAGTGCGTAAAGCCACTCTATGAGTATGAGgtgcgtctgt ... tggtttgcagAAGTGCGTCAAGAGAGTGGAGAAGGATGATACTGGGCATAAACACTGCACT
EST: gi|88965741|gb|CI006620.1|CI006620
EST:     TTGAGGAGCGCTGCAAGCCCCAGTGCGTAAAGCCACTCTATGAGTATGAG                         AAGTGCGTCAAGAGAGTGGAGAAGGATGATACTGGGCATAAACACTGCACT
genomic: TTGAGGAGCGCTGCAAGCCCCAGTGCGTAAAGCCACTCTATGAGTATGAGgtgcgtctgt ... tggtttgcagAAGTGCGTCAAGAGAGTGGAGAAGGATGATACTGGGCATAAACACTGCACT
EST: gi|88987188|gb|CI034211.1|CI034211
EST:     TTGAGGAGCGCTGCAAGCCCCAGTGCGTAAAGCCACTCTATGAGTATGAG                         AAGTGCGTCAAGAGAGTGGAGAAGGATGATACTGGGCATAAACACTGCACT
genomic: TTGAGGAGCGCTGCAAGCCCCAGTGCGTAAAGCCACTCTATGAGTATGAGgtgcgtctgt ... tggtttgcagAAGTGCGTCAAGAGAGTGGAGAAGGATGATACTGGGCATAAACACTGCACT
EST: gi|88322729|gb|CI545435.1|CI545435
EST:     TTGAGGAGCGCTGCAAGCCCCAGTGCGTAAAGCCACTCTATGAGTATGAG                         AAGTGCGTCAAGAGAGTGGAGAAGGATGATACTGGGCATAAACACTGCACT
genomic: TTGAGGAGCGCTGCAAGCCCCAGTGCGTAAAGCCACTCTATGAGTATGAGgtgcgtctgt ... tggtttgcagAAGTGCGTCAAGAGAGTGGAGAAGGATGATACTGGGCATAAACACTGCACT
EST: gi|88995948|gb|CI037239.1|CI037239
EST:     TTGAGGAGCGCTGCAAGCCCCAGTGCGTAAAGCCACTCTATGAGTATGAG                         AAGTGCGTCAAGAGAGTGGAGAAGGATGATACTGGGCATAAACACTGCACT
genomic: TTGAGGAGCGCTGCAAGCCCCAGTGCGTAAAGCCACTCTATGAGTATGAGgtgcgtctgt ... tggtttgcagAAGTGCGTCAAGAGAGTGGAGAAGGATGATACTGGGCATAAACACTGCACT
EST: gi|109712066|gb|CI029236.1|CI029236
EST:     TTGAGGAGCGCTGCAAGCCCCAGTGCGTAAAGCCACTCTATGAGTATGAG                         AAGTGCGTCAAGAGAGTGGAGAAGGATGATACTGGGCATAAACACTGCACT
genomic: TTGAGGAGCGCTGCAAGCCCCAGTGCGTAAAGCCACTCTATGAGTATGAGgtgcgtctgt ... tggtttgcagAAGTGCGTCAAGAGAGTGGAGAAGGATGATACTGGGCATAAACACTGCACT
EST: gi|88408920|gb|CI554242.1|CI554242
EST:     TTGAGGAGCGCTGCAAGCCCCAGTGCGTAAAGCCACTCTATGAGTATGAG                         AAGTGCGTCAAGAGAGTGGAGAAGGATGATACTGGGCATAAACACTGCACT
genomic: TTGAGGAGCGCTGCAAGCCCCAGTGCGTAAAGCCACTCTATGAGTATGAGgtgcgtctgt ... tggtttgcagAAGTGCGTCAAGAGAGTGGAGAAGGATGATACTGGGCATAAACACTGCACT
EST: gi|88242700|gb|CI242549.1|CI242549
EST:     TTGAGGAGCGCTGCAAGCCCCAGTGCGTAAAGCCACTCTATGAGTATGAG                         AAGTGCGTCAAGAGAGTGGAGAAGGATGATACTGGGCATAAACACTGCACT
genomic: TTGAGGAGCGCTGCAAGCCCCAGTGCGTAAAGCCACTCTATGAGTATGAGgtgcgtctgt ... tggtttgcagAAGTGCGTCAAGAGAGTGGAGAAGGATGATACTGGGCATAAACACTGCACT
EST: gi|86888008|gb|CI296033.1|CI296033
EST:     TTGAGGAGCGCTGCAAGCCCCAGTGCGTAAAGCCACTCTATGAGTATGAG                         AAGTGCGTCAAGAGAGTGGAGAAGGATGATACTGGGCATAAACACTGCACT
genomic: TTGAGGAGCGCTGCAAGCCCCAGTGCGTAAAGCCACTCTATGAGTATGAGgtgcgtctgt ... tggtttgcagAAGTGCGTCAAGAGAGTGGAGAAGGATGATACTGGGCATAAACACTGCACT
EST: gi|12622845|gb|AU173058.1|AU173058
EST:     TGAGGAGCCGCTGCAAGCCCCAGTGCGTAAAGCCACTCTATGAGTATGAG                         AAGTGCGTCAAGAGAGTGGAGAAGGATGATACTGGGGCATAAACACTGCAC
genomic: TGAGGAG-CGCTGCAAGCCCCAGTGCGTAAAGCCACTCTATGAGTATGAGgtgcgtctgt ... tggtttgcagAAGTGCGTCAAGAGAGTGGAGAAGGATGATACT-GGGCATAAACACTGCAC
EST: gi|58671735|gb|CK060421.1|CK060421
EST:     TTGAGGAGCGCTGCAAGCCCCAGTGCGTAAAGCCACTCTATGAGTATGAG                         AAGTGCGTCAAGAGAGTGGAGAAGGATGATACTGGGCATAAAC
genomic: TTGAGGAGCGCTGCAAGCCCCAGTGCGTAAAGCCACTCTATGAGTATGAGgtgcgtctgt ... tggtttgcagAAGTGCGTCAAGAGAGTGGAGAAGGATGATACTGGGCATAAAC
EST: gi|163928761|gb|EG711898.1|EG711898
EST:     TTGAGGAGCGCTGCAAGCCCCAGTGCGTAAAGCCACTCTATGAGTATGAG                         AAGTGCGTCAAGAGAGTGGAGAAGGATGATACTGGGCATAAACACTGCACT
genomic: TTGAGGAGCGCTGCAAGCCCCAGTGCGTAAAGCCACTCTATGAGTATGAGgtgcgtctgt ... tggtttgcagAAGTGCGTCAAGAGAGTGGAGAAGGATGATACTGGGCATAAACACTGCACT
EST: gi|33687921|gb|CF316160.1|CF316160
EST:     TTGAGGAGCGCTGCAAGCCCCAGTGCGTAAAGCCACTCTATGAGTATGAG                         AAGTGCGTCAAGAGAGTGGAGAAGGATGATACTGGGCATAAACACTGCACT
genomic: TTGAGGAGCGCTGCAAGCCCCAGTGCGTAAAGCCACTCTATGAGTATGAGgtgcgtctgt ... tggtttgcagAAGTGCGTCAAGAGAGTGGAGAAGGATGATACTGGGCATAAACACTGCACT
EST: gi|88331301|gb|CI675630.1|CI675630
EST:     TTGAGGAGCGCTGCAAGCCCCAGTGCGTAAAGCCACTCTATGAGTATGAG                         AAGTGCGTCAAGAGAGTGGAGAAGGATGATACTGGGCATAAACACTGCACT
genomic: TTGAGGAGCGCTGCAAGCCCCAGTGCGTAAAGCCACTCTATGAGTATGAGgtgcgtctgt ... tggtttgcagAAGTGCGTCAAGAGAGTGGAGAAGGATGATACTGGGCATAAACACTGCACT
EST: gi|88826154|gb|CI776719.1|CI776719
EST:     TTGAGGAGCGCTGCAAGCCCCAGTGCGTAAAGCCACTCTATGAGTATGAG                         AAGTGCGTCAAGAGAGTGGAGAAGGATGATACTGGGCATAAACACTGCACT
genomic: TTGAGGAGCGCTGCAAGCCCCAGTGCGTAAAGCCACTCTATGAGTATGAGgtgcgtctgt ... tggtttgcagAAGTGCGTCAAGAGAGTGGAGAAGGATGATACTGGGCATAAACACTGCACT
EST: gi|88325007|gb|CI645022.1|CI645022
EST:     TTGAGGAGCGCTGCAAGCCCCAGTGCGTAAAGCCACTCTATGAGTATGAG                         AAGTGCGTCAAGAGAGTGGAGAAGGATGATACTGGGCATAAACACTGCACT
genomic: TTGAGGAGCGCTGCAAGCCCCAGTGCGTAAAGCCACTCTATGAGTATGAGgtgcgtctgt ... tggtttgcagAAGTGCGTCAAGAGAGTGGAGAAGGATGATACTGGGCATAAACACTGCACT
EST: gi|88352834|gb|CI678860.1|CI678860
EST:     TTGAGGAGCGCTGCAAGCCCCAGTGCGTAAAGCCACTCTATGAGTATGAG                         AAGTGCGTCAAGAGAGTGGAGAAGGATGATACTGGGCATAAACACTGCACT
genomic: TTGAGGAGCGCTGCAAGCCCCAGTGCGTAAAGCCACTCTATGAGTATGAGgtgcgtctgt ... tggtttgcagAAGTGCGTCAAGAGAGTGGAGAAGGATGATACTGGGCATAAACACTGCACT
EST: gi|33657549|gb|CF280163.1|CF280163
EST:     TTGAGGAGCGCTGCAAGCCCCAGTGCGTAAAGCCACTCTATGAGTATGAG                         AAGTGCGTCAAGAGAGTGGAGAAGGATGATACTGGGCATAAACACTGCACT
genomic: TTGAGGAGCGCTGCAAGCCCCAGTGCGTAAAGCCACTCTATGAGTATGAGgtgcgtctgt ... tggtttgcagAAGTGCGTCAAGAGAGTGGAGAAGGATGATACTGGGCATAAACACTGCACT
EST: gi|88324915|gb|CI644926.1|CI644926
EST:     TTGAGGAGCGCTGCAAGCCCCAGTGCGTAAAGCCACTCTATGAGTATGAG                         AAGTGCGTCAAGAGAGTGGAGAAGGATGATACTGGGCATAAACACTGCACT
genomic: TTGAGGAGCGCTGCAAGCCCCAGTGCGTAAAGCCACTCTATGAGTATGAGgtgcgtctgt ... tggtttgcagAAGTGCGTCAAGAGAGTGGAGAAGGATGATACTGGGCATAAACACTGCACT
EST: gi|86524916|gb|CI165122.1|CI165122
EST:     TTGAGGAGCGCTGCAAGCCCCAGTGCGTAAAGCCACTCTATGAGTATGAG                         AAGTGCGTCAAGAGAGTGGAGAAGGATGATACTGGGCATAAACACTGCACT
genomic: TTGAGGAGCGCTGCAAGCCCCAGTGCGTAAAGCCACTCTATGAGTATGAGgtgcgtctgt ... tggtttgcagAAGTGCGTCAAGAGAGTGGAGAAGGATGATACTGGGCATAAACACTGCACT
EST: gi|33659343|gb|CF281956.1|CF281956
EST:     TTGAGGAGCGCTGCAAGCCCCAGTGCGTAAAGCCACTCTATGAGTATGAG                         AAGTGCGTCAAGAGAGTGGAGAAGGATGATACTGGGCATAAACACTGCACT
genomic: TTGAGGAGCGCTGCAAGCCCCAGTGCGTAAAGCCACTCTATGAGTATGAGgtgcgtctgt ... tggtttgcagAAGTGCGTCAAGAGAGTGGAGAAGGATGATACTGGGCATAAACACTGCACT
EST: gi|88578474|gb|CI687407.1|CI687407
EST:     TTGAGGAGCGCTGCAAGCCCCAGTGCGTAAAGCCACTCTATGAGTATGAG                         AAGTGCGTCAAGAGAGTGGAGAAGGATGATACTGGGCATAAACACTGCACT
genomic: TTGAGGAGCGCTGCAAGCCCCAGTGCGTAAAGCCACTCTATGAGTATGAGgtgcgtctgt ... tggtttgcagAAGTGCGTCAAGAGAGTGGAGAAGGATGATACTGGGCATAAACACTGCACT
EST: gi|88524690|gb|CI453633.1|CI453633
EST:     TTGAGGAGCGCTGCAAGCCCCAGTGCGTAAAGCCACTCTATGAGTATGAG                         AAGTGCGTCAAGAGAGTGGAGAAGGATGATACTGGGCATAAACACTGCACT
genomic: TTGAGGAGCGCTGCAAGCCCCAGTGCGTAAAGCCACTCTATGAGTATGAGgtgcgtctgt ... tggtttgcagAAGTGCGTCAAGAGAGTGGAGAAGGATGATACTGGGCATAAACACTGCACT
EST: gi|88356099|gb|CI627547.1|CI627547
EST:     TTGAGGAGCGCTGCAAGCCCCAGTGCGTAAAGCCACTCTATGAGTATGAG                         AAGTGCGTCAAGAGAGTGGAGAAGGATGATACTGGGCATAAACACTGCACT
genomic: TTGAGGAGCGCTGCAAGCCCCAGTGCGTAAAGCCACTCTATGAGTATGAGgtgcgtctgt ... tggtttgcagAAGTGCGTCAAGAGAGTGGAGAAGGATGATACTGGGCATAAACACTGCACT
EST: gi|55432260|gb|CV729150.1|CV729150
EST:     TTGAGGAGCGCTGCAAGCCCCAGTGCGTAAAGCCACTCTATGAGTATGAG                         AAGTGCGTCAAGAGAGTGGAGAAGGATGATACTGGGCATAAACACTGCACT
genomic: TTGAGGAGCGCTGCAAGCCCCAGTGCGTAAAGCCACTCTATGAGTATGAGgtgcgtctgt ... tggtttgcagAAGTGCGTCAAGAGAGTGGAGAAGGATGATACTGGGCATAAACACTGCACT
EST: gi|88738666|gb|CI762174.1|CI762174
EST:     TTGAGGAGCGCTGCAAGCCCCAGTGCGTAAAGCCACTCTATGAGTATGAG                         AAGTGCGTCAAGAGAGTGGAGAAGGATGATACTGGGCATAAACACTGCACT
genomic: TTGAGGAGCGCTGCAAGCCCCAGTGCGTAAAGCCACTCTATGAGTATGAGgtgcgtctgt ... tggtttgcagAAGTGCGTCAAGAGAGTGGAGAAGGATGATACTGGGCATAAACACTGCACT
EST: gi|88825393|gb|CI775958.1|CI775958
EST:     TTGAGGAGCGCTGCAAGCCCCAGTGCGTAAAGCCACTCTATGAGTATGAG                         AAGTGCGTCAAGAGAGTGGAGAAGGATGATACTGGGCATAAACACTGCACT
genomic: TTGAGGAGCGCTGCAAGCCCCAGTGCGTAAAGCCACTCTATGAGTATGAGgtgcgtctgt ... tggtttgcagAAGTGCGTCAAGAGAGTGGAGAAGGATGATACTGGGCATAAACACTGCACT
EST: gi|88241545|gb|CI241394.1|CI241394
EST:     TTGAGGAGCGCTGCAAGCCCCAGTGCGTAAAGCCACTCTATGAGTATGAG                         AAGTGCGTCAAGAGAGTGGAGAAGGATGATACTGGGCATAAACACTGCACT
genomic: TTGAGGAGCGCTGCAAGCCCCAGTGCGTAAAGCCACTCTATGAGTATGAGgtgcgtctgt ... tggtttgcagAAGTGCGTCAAGAGAGTGGAGAAGGATGATACTGGGCATAAACACTGCACT
EST: gi|33680974|gb|CF309213.1|CF309213
EST:     TTGAGGAGCGCTGCAAGCCCCAGTGCGTAAAGCCACTCTATGAGTATGAG                         AAGTGCGTCAAGAGAGTGGAGAAGGATGATACTGGGCATAAACACTGCACT
genomic: TTGAGGAGCGCTGCAAGCCCCAGTGCGTAAAGCCACTCTATGAGTATGAGgtgcgtctgt ... tggtttgcagAAGTGCGTCAAGAGAGTGGAGAAGGATGATACTGGGCATAAACACTGCACT
EST: gi|88528646|gb|CI456897.1|CI456897
EST:     TTGAGGAGCGCTGCAAGCCCCAGTGCGTAAAGCCACTCTATGAGTATGAG                         AAGTGCGTCAAGAGAGTGGAGAAGGATGATACTGGGCATAAACACTGCACT
genomic: TTGAGGAGCGCTGCAAGCCCCAGTGCGTAAAGCCACTCTATGAGTATGAGgtgcgtctgt ... tggtttgcagAAGTGCGTCAAGAGAGTGGAGAAGGATGATACTGGGCATAAACACTGCACT
EST: gi|7652183|gb|AU089712.1|AU089712
EST:     TTGAGGAGCGCTGCAAGCCCCAGTGCGTAAAGCCACTCTATGAGTATGAG                         AAGTGCGTCAAGAGAGTGGAGAAGGATGATACTGGGCATAAACACTGCACT
genomic: TTGAGGAGCGCTGCAAGCCCCAGTGCGTAAAGCCACTCTATGAGTATGAGgtgcgtctgt ... tggtttgcagAAGTGCGTCAAGAGAGTGGAGAAGGATGATACTGGGCATAAACACTGCACT
EST: gi|88542848|gb|CI472202.1|CI472202
EST:     TTGAGGAGCGCTGCAAGCCCCAGTGCGTAAAGCCACTCTATGAGTATGAG                         AAGTGCGTCAAGAGAGTGGAGAAGGATGATACTGGGCATAAACACTGCACT
genomic: TTGAGGAGCGCTGCAAGCCCCAGTGCGTAAAGCCACTCTATGAGTATGAGgtgcgtctgt ... tggtttgcagAAGTGCGTCAAGAGAGTGGAGAAGGATGATACTGGGCATAAACACTGCACT
EST: gi|88992334|gb|CI035472.1|CI035472
EST:     TTGAGGAGCGCTGCAAGCCCCAGTGCGTAAAGCCACTCTATGAGTATGAG                         AAGTGCGTCAAGAGAGTGGAGAAGGATGATACTGGGCATAAACACTGCACT
genomic: TTGAGGAGCGCTGCAAGCCCCAGTGCGTAAAGCCACTCTATGAGTATGAGgtgcgtctgt ... tggtttgcagAAGTGCGTCAAGAGAGTGGAGAAGGATGATACTGGGCATAAACACTGCACT
EST: gi|33807505|gb|CF329631.1|CF329631
EST:     TTGAGGAGCGCTGCAAGCCCCAGTGCGTAAAGCCACTCTATGAGTATGAG                         AAGTGCGTCAAGAGAGTGGAGAAGGATGATACTGGGCATAAACACTGCACT
genomic: TTGAGGAGCGCTGCAAGCCCCAGTGCGTAAAGCCACTCTATGAGTATGAGgtgcgtctgt ... tggtttgcagAAGTGCGTCAAGAGAGTGGAGAAGGATGATACTGGGCATAAACACTGCACT
EST: gi|3760892|gb|C98146.1|C98146
EST:     TTGAGGAGCGCTGCAAGCCCCAGTGCGTAAAGCCACTCTATGAGTATGAG                         AAGTGCGTCAAGAGAGTGGAGAAGGATGATACTGGGCATAAACACTGCACT
genomic: TTGAGGAGCGCTGCAAGCCCCAGTGCGTAAAGCCACTCTATGAGTATGAGgtgcgtctgt ... tggtttgcagAAGTGCGTCAAGAGAGTGGAGAAGGATGATACTGGGCATAAACACTGCACT
EST: gi|427275|gb|D23358.1|D23358
EST:     TTGAGGAGCGCTGCAAGCCC-AGTGCGTAAAGCCACTCTATGAGTATGAG                         AAGTGCGTCAAGAGAGTGGAGAAGGATGATACTGGGCATAAACACTGCACT
genomic: TTGAGGAGCGCTGCAAGCCCCAGTGCGTAAAGCCACTCTATGAGTATGAGgtgcgtctgt ... tggtttgcagAAGTGCGTCAAGAGAGTGGAGAAGGATGATACTGGGCATAAACACTGCACT
EST: gi|8334651|gb|BE039635.1|BE039635
EST:     TTGAGGAGCGCTGCAAGCCCCAGTGCGTAAAGCCACTCTATGAGTATGAG                         AAGTGCGTCAAGAGAGTGGAGAAGGATGATACTGGGCATAAACACTGCACT
genomic: TTGAGGAGCGCTGCAAGCCCCAGTGCGTAAAGCCACTCTATGAGTATGAGgtgcgtctgt ... tggtttgcagAAGTGCGTCAAGAGAGTGGAGAAGGATGATACTGGGCATAAACACTGCACT
EST: gi|88366754|gb|CI558928.1|CI558928
EST:     TTGAGGAGCGCTGCAAGCCCCAGTGCGTAAAGCCACTCTATGAGTATGAG                         AAGTGCGTCAAGAGAGTGGAGAAGGATGATACTGGGCATAAACACTGCACT
genomic: TTGAGGAGCGCTGCAAGCCCCAGTGCGTAAAGCCACTCTATGAGTATGAGgtgcgtctgt ... tggtttgcagAAGTGCGTCAAGAGAGTGGAGAAGGATGATACTGGGCATAAACACTGCACT
EST: gi|33688858|gb|CF317097.1|CF317097
EST:     TTGAGGAGCGCTGCAAGCCCCAGTGCGTAAAGCCACTCTATGAGTATGAG                         AAGTGCGTCAAGAGAGTGGAGAAGGATGATACTGGGCATAAACACTGCACT
genomic: TTGAGGAGCGCTGCAAGCCCCAGTGCGTAAAGCCACTCTATGAGTATGAGgtgcgtctgt ... tggtttgcagAAGTGCGTCAAGAGAGTGGAGAAGGATGATACTGGGCATAAACACTGCACT
EST: gi|95101167|gb|CI692902.1|CI692902
EST:     TTGAGGAGCGCTGCAAGCCCCAGTGCGTAAAGCCACTCTATGAGTATGAG                         AAGTGCGTCAAGAGAGTGGAGAAGGATGATACTGGGCATAAACACTGCACT
genomic: TTGAGGAGCGCTGCAAGCCCCAGTGCGTAAAGCCACTCTATGAGTATGAGgtgcgtctgt ... tggtttgcagAAGTGCGTCAAGAGAGTGGAGAAGGATGATACTGGGCATAAACACTGCACT
EST: gi|88977156|gb|CI024893.1|CI024893
EST:     TTGAGGAGCGCTGCAAGCCCCAGTGCGTAAAGCCACTCTATGAGTATGAG                         AAGTGCGTCAAGAGAGTGGAGAAGGATGATACTGGGCATAAACACTGCACT
genomic: TTGAGGAGCGCTGCAAGCCCCAGTGCGTAAAGCCACTCTATGAGTATGAGgtgcgtctgt ... tggtttgcagAAGTGCGTCAAGAGAGTGGAGAAGGATGATACTGGGCATAAACACTGCACT
EST: gi|38471279|gb|CF955410.1|CF955410
EST:     GCTGCAAGCCCCAGTGCGT-AAGCCACTCTATGAGTATGAG                         AAGTGCGTCAAGAGAGTGGAGAAGGATGATACTGGGCATAAACACTGCACT
genomic: GCTGCAAGCCCCAGTGCGTAAAGCCACTCTATGAGTATGAGgtgcgtctgt ... tggtttgcagAAGTGCGTCAAGAGAGTGGAGAAGGATGATACTGGGCATAAACACTGCACT
EST: gi|286736|gb|D15543.1|D15543
EST:     TTGAGGAGCGCTGCAAGCCC-AGTGCGTAAAGCCACTCTATGAGTATGAG                         AAGTGCGTCAAGAGAGTGGAGAAGGATGATACTGGGCATAAACACTGCACT
genomic: TTGAGGAGCGCTGCAAGCCCCAGTGCGTAAAGCCACTCTATGAGTATGAGgtgcgtctgt ... tggtttgcagAAGTGCGTCAAGAGAGTGGAGAAGGATGATACTGGGCATAAACACTGCACT
EST: gi|4714270|gb|AU058237.1|AU058237
EST:     TTGAGGAGCGCTGCAAGCCCCAGTGCGTAAAGCCACTCTATGAGTATGAG                         AAGTGCGTCAAGAGAGTGGAGAAGGATGATACTGGGCATAAACACTGCACT
genomic: TTGAGGAGCGCTGCAAGCCCCAGTGCGTAAAGCCACTCTATGAGTATGAGgtgcgtctgt ... tggtttgcagAAGTGCGTCAAGAGAGTGGAGAAGGATGATACTGGGCATAAACACTGCACT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 74 (upstream exon), 71 (downstream exon)
Score: 135

GGCGGATGAAGAACCTGTTGATCCAAAGAAGTACCTTGAGGAGCGCTGCAAGCCCCAGTGCGTAAAGCCACTCTATGAGTATGAGgtgcgtctgt ... tggtttgcagAAGTGCGTCAAGAGAGTGGAGAAGGATGATACTGGGCATAAACACTGCACTGGGCAATATTTCGACTATTGGTCATGCATTGACAAATGT




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Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GGCGGATGAAGAACCTGTTGATCCAAAGAAGTACCTTGAGGAGCGCTGCAAGCCCCAGTGCGTAAAGCCACTCTATGAGTATGAGgtgcgtctgtgcttgctaattttcttctttggggctttattatcatgagtttcttttgggcagtgggcacatgcttcacttgatggaagtgttcattatg

- - - - - - - - - - - - - - - - - -  GAGGAG