1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
AGTCGGAAAGATGTGGAGGGGTCGCTGTTCGTTGTGAAGAGgtgagtgttttagggttttggttggggttttgataccgtctgagcctgcgatttagggatctgattgtttcgggggtggttttgtctcgttgtag
species | Oryza sativa |
transcript | LOC_Os11g05650.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: AGTCGGAAAGATGTGGAGGGGTCGCTGTTCGTTGTGAAGAG GAATACTCAGCCGAGGTTCCAGTTCATCGTTATGAACAGGCGTAACACGGEST: gi|58689521|gb|CK078208.1|CK078208
genomic: AGTCGGAAAGATGTGGAGGGGTCGCTGTTCGTTGTGAAGAGgtgagtgttt ... ctcgttgtagGAATACTCAGCCGAGGTTCCAGTTCATCGTTATGAACAGGCGTAACACGG
EST: AGTCGGAAAGATGTGGAGGGGTCGCTGTTCGTTGTGAAGAG GAATACTCAGCCGAGGTTCCAGTTCATCGTTATGAACAGGCGTAACACGG
genomic: AGTCGGAAAGATGTGGAGGGGTCGCTGTTCGTTGTGAAGAGgtgagtgttt ... ctcgttgtagGAATACTCAGCCGAGGTTCCAGTTCATCGTTATGAACAGGCGTAACACGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGTCGGAAAGATGTGGAGGGGTCGCTGTTCGTTGTGAAGAGgtgagtgttttagggttttggttggggttttgataccgtctgagcctgcgatttagggatctgattgtttcgggggtggttttgtctcgttgtag
- - - AAGATG
- - - - - - GTGGAG
- - - - - - TGGAGG
- - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - TGAAGA