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AAGCTAGCAGTAGTTCAGGACATCCAAGGCAGAATCCTCATGTTCTTGGCTATGGCTTCCATGGAGCTATGCCCAACTCCTTGCCTTCTGCAAACTTGTTgtaagagctctctctctctctctctctctctctctctctccatgagtcttcttttctctttttgtgattcaatttatgcaggtgcaccaagaaacatgat...
species | Oryza sativa |
transcript | LOC_Os11g05480.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: ATGGCTTCCATGTGAGCTATGCCCAACTCCTTGCCTTCTGCAAACTTGTT CGAGCAGCAAGGAGGTGCTAACTATTATGGAGAACTAGAAGAGGCTCTGATEST: gi|117234893|gb|CT847943.1|CT847943
genomic: ATGGCTTCCATG-GAGCTATGCCCAACTCCTTGCCTTCTGCAAACTTGTTgtaagagctc ... tccctgacagCGAGCAGCAAGGAGGTGCTAACTATTTTGGAGAACTAGAAGAGGCTCTGAT
EST: TATGGCTTCCATGGAGCTATGCCCAACTCCTTGCCTTCTGCAAACTTGTT CGAGCAGCAAGGAGGTGCTAACTATTTTGGAGAACTAGAAGAGGCTCTGATEST: gi|88350669|gb|CI617524.1|CI617524
genomic: TATGGCTTCCATGGAGCTATGCCCAACTCCTTGCCTTCTGCAAACTTGTTgtaagagctc ... tccctgacagCGAGCAGCAAGGAGGTGCTAACTATTTTGGAGAACTAGAAGAGGCTCTGAT
EST: TATGGCTTCCATGGAGCTATGCCCAACTCCTTGCCTTCTGCAAACTTGTT CGAGCAGCAAGGAGGTGCTAACTATTTTGGAGAACTAGAAGAGGCTCTGATEST: gi|10423528|gb|AU108123.1|AU108123
genomic: TATGGCTTCCATGGAGCTATGCCCAACTCCTTGCCTTCTGCAAACTTGTTgtaagagctc ... tccctgacagCGAGCAGCAAGGAGGTGCTAACTATTTTGGAGAACTAGAAGAGGCTCTGAT
EST: TATGGCTTCCATGGAGCTATGCCCAACTCCTTGCCTTCTGCAAACTTGTT CGAGCAGCAAGGAGGTGCTAACTATTTTGGAGAACTAGAAGAGGCTCTGAT
genomic: TATGGCTTCCATGGAGCTATGCCCAACTCCTTGCCTTCTGCAAACTTGTTgtaagagctc ... tccctgacagCGAGCAGCAAGGAGGTGCTAACTATTTTGGAGAACTAGAAGAGGCTCTGAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAGCTAGCAGTAGTTCAGGACATCCAAGGCAGAATCCTCATGTTCTTGGCTATGGCTTCCATGGAGCTATGCCCAACTCCTTGCCTTCTGCAAACTTGTTgtaagagctctctctctctctctctctctctctctctctccatgagtcttcttttctctttttgtgattcaatttatgcaggtgcaccaagaaacatgat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctctctct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctctctcc