1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
TTACCACTGTTGATTCCGGGAGCAAGGCTCTGGAGTTCTTGGGGCTCCATGATCATGAGGACAGCCCAATTTCTACTCAATCAGATCAGCAGgtaagaagatgaatggtaccataggtgctaaccatgaaaaaaaatacggattaacaggaggttgcagtgttctttgttctgaacaagagtttctgaattgctcttttatggattaacag
species | Oryza sativa |
transcript | LOC_Os11g04720.2 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: GGCTCCATGATCATGAGGACAGCCCAATTTCTACTCAATCAGATCAGCAG GAGGTTGCAGTGAACCTGATCATCACAGACTACTGCATGCCTGGCATGACAEST: gi|58695740|gb|CK084427.1|CK084427
genomic: GGCTCCATGATCATGAGGACAGCCCAATTTCTACTCAATCAGATCAGCAGgtaagaagat ... ggattaacagGAGGTTGCAGTGAACCTGATCATCACAGACTACTGCATGCCTGGCATGACA
EST: GGCTCCATGATCATGAGGACAGCCCAATTTCTACTCAATCAGATCAGCAG GAGGTTGCAGTGAACCTGATCATCACAGACTACTGCATGCCTGGCATGACAEST: gi|38482474|gb|CF966510.1|CF966510
genomic: GGCTCCATGATCATGAGGACAGCCCAATTTCTACTCAATCAGATCAGCAGgtaagaagat ... ggattaacagGAGGTTGCAGTGAACCTGATCATCACAGACTACTGCATGCCTGGCATGACA
EST: GGCTCCATGATCATGAGGACAGCCCAATTTCTACTCAATCAGATCAGCAG GAGGTTGCAGTGAACCTGATCATCACAGACTACTGCATGCCTGGCATGACA
genomic: GGCTCCATGATCATGAGGACAGCCCAATTTCTACTCAATCAGATCAGCAGgtaagaagat ... ggattaacagGAGGTTGCAGTGAACCTGATCATCACAGACTACTGCATGCCTGGCATGACA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTACCACTGTTGATTCCGGGAGCAAGGCTCTGGAGTTCTTGGGGCTCCATGATCATGAGGACAGCCCAATTTCTACTCAATCAGATCAGCAGgtaagaagatgaatggtaccataggtgctaaccatgaaaaaaaatacggattaacaggaggttgcagtgttctttgttctgaacaagagtttctgaattgctcttttatggattaacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA