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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTCTGCCAATCTCTTCCTTGTTCCCCTTCTTGTACTTCATGgtaagtttaatctccatgcattccattcaatttcatgaaacatatattttgcaaaagatactaaatgcattcccttctttacaacag

Basic information

species Oryza sativa
transcript LOC_Os11g04030.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os11g04030.1 (Oryza sativa), 5'ss of exon 2
lower sequence: GRMZM5G877788_T03 (Zea mays), 5'ss of exon 2
CTCTGCCAATCTCTTCCTTGTTCCCCTTCTTGTACTTCATGgtaagttta---atctccatgcattccattcaattt-----catgaaa-----catatatttt---------------gcaaaagatactaaatgcattcccttctttacaacag------------------
||||||||||| | ||| ||||||||||| | ||||||||||||||  |     ||| | ||| | ||||||  | |       |||||     | |  |||||               ||||  ||   |   |   ||  |||  |   ||                     
CTCTGCCAATCACGTCCCTGTTCCCCTTCCTCTACTTCATGgtaagcctgcctgtctgcctgcctgccattctttctgttgctctgaaatcatccgtgcattttctttctttttatttggcaagggactttccttctcttttctttctcctaatttatagtggtgaccaaacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29680054|gb|CB676329.1|CB676329
EST:     CTCTGCCAATCTCTTCCTTGTTCCCCTTCTTGTACTTCATG                         ATAAGGGAATTGCATATTTCTCGGACAGAGGAAGATATTGGATTCTATGCT
genomic: CTCTGCCAATCTCTTCCTTGTTCCCCTTCTTGTACTTCATGgtaagtttaa ... tttacaacagATAAGGGAATTGCATATTTCTCGGACAGAGGAAGATATTGGATTCTATGCT
EST: gi|88359862|gb|CI617773.1|CI617773
EST:     CTCTGCCAATCTCTTCCTTGTTCCCCTTCTTGTACTTCATG                         ATAAGGGAATTGCATATTTCTCGGACAGAGGAAGATATTGGATTCTATGCT
genomic: CTCTGCCAATCTCTTCCTTGTTCCCCTTCTTGTACTTCATGgtaagtttaa ... tttacaacagATAAGGGAATTGCATATTTCTCGGACAGAGGAAGATATTGGATTCTATGCT
EST: gi|88356270|gb|CI613552.1|CI613552
EST:     CTCTGCCAATCTCTTCCTTGTTCCCCTTCTTGTACTTCATG                         ATAAGGGAATTGCATATTTCTCGGACAGAGGAAGATATTGGAT-CTATGCT
genomic: CTCTGCCAATCTCTTCCTTGTTCCCCTTCTTGTACTTCATGgtaagtttaa ... tttacaacagATAAGGGAATTGCATATTTCTCGGACAGAGGAAGATATTGGATTCTATGCT
EST: gi|29674310|gb|CB670585.1|CB670585
EST:     CTCTGCCAATCTCTTCCTTGTTCCCCTTCTTGTACTTCATG                         ATAAGGGAATTGCATATTTCTCGGACAGAGGAAGATATTGGATTCTATGCT
genomic: CTCTGCCAATCTCTTCCTTGTTCCCCTTCTTGTACTTCATGgtaagtttaa ... tttacaacagATAAGGGAATTGCATATTTCTCGGACAGAGGAAGATATTGGATTCTATGCT
EST: gi|29644401|gb|CB649408.1|CB649408
EST:     CTCTGCCAATCTCTTCCTTGTTCCCCTTCTTGTACTTCATG                         ATAAGGGAATTGCATATTTCTCGGACAGAGGAAGATATTGGATTCTATGCT
genomic: CTCTGCCAATCTCTTCCTTGTTCCCCTTCTTGTACTTCATGgtaagtttaa ... tttacaacagATAAGGGAATTGCATATTTCTCGGACAGAGGAAGATATTGGATTCTATGCT
EST: gi|88576396|gb|CI670541.1|CI670541
EST:     CTCTGCCAATCTCTTCCTTGTTCCCCTTCTTGTACTTCATG                         ATAAGGGAATTGCATATTTCTCGGACAGAGGAAGATATTG
genomic: CTCTGCCAATCTCTTCCTTGTTCCCCTTCTTGTACTTCATGgtaagtttaa ... tttacaacagATAAGGGAATTGCATATTTCTCGGACAGAGGAAGATATTG
EST: gi|33677870|gb|CF306109.1|CF306109
EST:     CTCTGCCAATCTCTTCCTTGTTCCCCTTCTTGTACTTCATG                         ATAAGGGAATTGCATATTTCTCGGACAGAGGAAGATATTGGATTCTATGCT
genomic: CTCTGCCAATCTCTTCCTTGTTCCCCTTCTTGTACTTCATGgtaagtttaa ... tttacaacagATAAGGGAATTGCATATTTCTCGGACAGAGGAAGATATTGGATTCTATGCT
EST: gi|88334950|gb|CI648725.1|CI648725
EST:     CTCTGCCAATCTCTTCCTTGTTCCCCTTCTTGTACTTCATG                         ATAAGGGAATTGCATATTTCTCGGACAGAGGAAGATATTGGATTCTATGCT
genomic: CTCTGCCAATCTCTTCCTTGTTCCCCTTCTTGTACTTCATGgtaagtttaa ... tttacaacagATAAGGGAATTGCATATTTCTCGGACAGAGGAAGATATTGGATTCTATGCT
EST: gi|88330064|gb|CI652455.1|CI652455
EST:     CTCTGCCAATCTCTTCCTTGTTCCCCTTCTTGTACTTCATG                         ATAAGGGAATTGCATATTTCTCGGACAGAGGAAGATATTGGATTCTATGCT
genomic: CTCTGCCAATCTCTTCCTTGTTCCCCTTCTTGTACTTCATGgtaagtttaa ... tttacaacagATAAGGGAATTGCATATTTCTCGGACAGAGGAAGATATTGGATTCTATGCT
EST: gi|33677492|gb|CF305731.1|CF305731
EST:     CTCTGCCAATCTCTTCCTTGTTCCCCTTCTTGTACTTCATG                         ATAAGGGAATTGCATATTTCTCGGACAGAGGAAGATATTGGATTCTATGCT
genomic: CTCTGCCAATCTCTTCCTTGTTCCCCTTCTTGTACTTCATGgtaagtttaa ... tttacaacagATAAGGGAATTGCATATTTCTCGGACAGAGGAAGATATTGGATTCTATGCT
EST: gi|88347612|gb|CI634297.1|CI634297
EST:     CTCTGCCAATCTCTTCCTTGTTCCCCTTCTTGTACTTCATG                         ATAAGGGAATTGCATATTTCTCGGACAGAGGAAGATATTGGATTCTATGCT
genomic: CTCTGCCAATCTCTTCCTTGTTCCCCTTCTTGTACTTCATGgtaagtttaa ... tttacaacagATAAGGGAATTGCATATTTCTCGGACAGAGGAAGATATTGGATTCTATGCT
EST: gi|87008869|gb|CI304812.1|CI304812
EST:     CTCTGCCAATCTCTTCCTTGTTCCCCTTCTTGTACTTCATG                         ATAAGGGAATTG
genomic: CTCTGCCAATCTCTTCCTTGTTCCCCTTCTTGTACTTCATGgtaagtttaa ... tttacaacagATAAGGGAATTG
EST: gi|88301079|gb|CI594605.1|CI594605
EST:     CTCTGCCAATCTCTTCCTTGTTCCCCTTCTTGTACTTCATG                         ATAAGGGAATTGCATATTTCTCGGACAGA
genomic: CTCTGCCAATCTCTTCCTTGTTCCCCTTCTTGTACTTCATGgtaagtttaa ... tttacaacagATAAGGGAATTGCATATTTCTCGGACAGA
EST: gi|29682083|gb|CB678358.1|CB678358
EST:     CTCTGCCAATCTCTTCCTTGTTCCCCTTCTTGTACTTCATG                         ATAAGGGAATTGCATATTTCTCGGACAGAGGAAGATATTGGATTCTATGCT
genomic: CTCTGCCAATCTCTTCCTTGTTCCCCTTCTTGTACTTCATGgtaagtttaa ... tttacaacagATAAGGGAATTGCATATTTCTCGGACAGAGGAAGATATTGGATTCTATGCT
EST: gi|29679865|gb|CB676140.1|CB676140
EST:     CTCTGCCAATCTCTTCCTTGTTCCCCTTCTTGTACTTCATG                         ATAAGGGAATTGCATATTTCTCGGACAGAGGAAGATATTGGATTCTATGCT
genomic: CTCTGCCAATCTCTTCCTTGTTCCCCTTCTTGTACTTCATGgtaagtttaa ... tttacaacagATAAGGGAATTGCATATTTCTCGGACAGAGGAAGATATTGGATTCTATGCT
EST: gi|88332574|gb|CI651734.1|CI651734
EST:     CTCTGCCAATCTCTTCCTTGTTCCCCTTCTTGTACTTCATG                         ATAAGGGAATTGCATATTTCTCGGACAGAGGAAGATATTGGATTCTATGCT
genomic: CTCTGCCAATCTCTTCCTTGTTCCCCTTCTTGTACTTCATGgtaagtttaa ... tttacaacagATAAGGGAATTGCATATTTCTCGGACAGAGGAAGATATTGGATTCTATGCT
EST: gi|88353644|gb|CI633035.1|CI633035
EST:     CTCTGCCAATCTCTTCCTTGTTCCCCTTCTTGTACTTCATG                         ATAAGGGAATTGCATATTTCTCGGACAGAGGAAGATATTGGATTCTATGCT
genomic: CTCTGCCAATCTCTTCCTTGTTCCCCTTCTTGTACTTCATGgtaagtttaa ... tttacaacagATAAGGGAATTGCATATTTCTCGGACAGAGGAAGATATTGGATTCTATGCT
EST: gi|33678908|gb|CF307147.1|CF307147
EST:     CTCTGCCAATCTCTTCCTTGTTCCCCTTCTTGTACTTCATG                         ATAAGGGAATTGCATATTTCTCGGACAGAGGAAGATATTGGATTCTATGCT
genomic: CTCTGCCAATCTCTTCCTTGTTCCCCTTCTTGTACTTCATGgtaagtttaa ... tttacaacagATAAGGGAATTGCATATTTCTCGGACAGAGGAAGATATTGGATTCTATGCT
EST: gi|88330118|gb|CI650794.1|CI650794
EST:     CTCTGCCAATCTCTTCCTTGTTCCCCTTCTTGTACTTCATG                         ATAAGGGAATTGCATATTTCTCGGACAGAGGAA
genomic: CTCTGCCAATCTCTTCCTTGTTCCCCTTCTTGTACTTCATGgtaagtttaa ... tttacaacagATAAGGGAATTGCATATTTCTCGGACAGAGGAA
EST: gi|29678070|gb|CB674345.1|CB674345
EST:     CTCTGCCAATCTCTTCCTTGTTCCCCTTCTTGTACTTCATG                         ATAAGGGAATTGCATATTTCTCGGACAGAGGAAGATATTGGATTCTATGCT
genomic: CTCTGCCAATCTCTTCCTTGTTCCCCTTCTTGTACTTCATGgtaagtttaa ... tttacaacagATAAGGGAATTGCATATTTCTCGGACAGAGGAAGATATTGGATTCTATGCT
EST: gi|88303400|gb|CI669048.1|CI669048
EST:     CTCTGCCAATCTCTTCCTTGTTCCCCTTCTTGTACTTCATG                         ATAAGGGAATTGCATATTTCTCGGACAGAGGAAGATATTGGATTCTATGCT
genomic: CTCTGCCAATCTCTTCCTTGTTCCCCTTCTTGTACTTCATGgtaagtttaa ... tttacaacagATAAGGGAATTGCATATTTCTCGGACAGAGGAAGATATTGGATTCTATGCT