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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTACACTTACATGCGACCCAGACTGCGGTCCTCAAGGTTGATGCCTCACCGCAACTTGCTCGACAGATCCCTGACACACTATTTGGAATATTTTTTGAGgtaagccgtgagacatatacagtaattctgtttttcacaattgcactgtatcactatatcctttcctctggcacttttttgttaggatgctcaagtgcattagcatgcccagaataatccaggtagattatacatgttccaccatgtcctgatgataatgatcttggctaatattgtag

Basic information

species Oryza sativa
transcript LOC_Os11g03730.3
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os11g03730.2 (Oryza sativa), 5'ss of exon 2
lower sequence: GRMZM2G006130_T06 (Zea mays), 5'ss of exon 2
GTTACACTTACATGCGACCCAGACTGCGGTCCTCAAGGTTGATGCCTCACCGCAACTTGCTCGACAGATCCCTGACACACTATTTGGAATATTTTTTGAGgtaagccgtgagacatatacagtaattctgtttttcacaatt-gcactgtatcactatatcctttcctctggcacttttttgttaggatgctcaagtgcattagcatgcccagaataatccaggtagattatacatgttccaccatgtcctgatgataatgatcttggctaatattgtag
 ||  |  || | || |||||||| || | |||||||||||||||||| || || ||||| ||  |||||||||| ||||| ||||| |||||||||||||| || |   ||   |||      || ||  ||   |   ||  |    ||| |  | |     |  ||    |  |  |   | |  | ||  ||                                                                                    
TTTGGAAATAGAGGCCACCCAGACAGCAGCCCTCAAGGTTGATGCCTCGCCACAGCTTGCCCGGAAGATCCCTGAAACACTGTTTGGGATATTTTTTGAGgtgaggcagtagtt-tatcggtagatgctagttcctatgttttaccacatataatcagaaagaataatccaa-atatactgcatggcctactgtag------------------------------------------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88763952|gb|CI773368.1|CI773368
EST:     CGCAACTTGCTCGACAGATCCCTGACACACTATTTGGAATATTTTTTGAG                         GAAATCAACCATGCAGGGGCTGGTGGAATATGGGCTGAACTTGTTAGTAAC
genomic: CGCAACTTGCTCGACAGATCCCTGACACACTATTTGGAATATTTTTTGAGgtaagccgtg ... aatattgtagGAAATCAACCATGCAGGGGCTGGTGGAATATGGGCTGAACTTGTTAGTAAC
EST: gi|29673416|gb|CB669691.1|CB669691
EST:     CGCAACTTGCTCGACAGATCCCTGACACACTATTTGGAATATTTTTTGAG                         GAAATCAACCATGCAGGGGCTGGTGGAATATGGGCTGAACTTGTTAGTAAC
genomic: CGCAACTTGCTCGACAGATCCCTGACACACTATTTGGAATATTTTTTGAGgtaagccgtg ... aatattgtagGAAATCAACCATGCAGGGGCTGGTGGAATATGGGCTGAACTTGTTAGTAAC
EST: gi|29628283|gb|CB633294.1|CB633294
EST:     CGCAACTTGCTCGACAGATCCCTGACACACTATTTGGAATATTTTTTGAG                         GAAATCAACCATGCAGGGGCTGGTGGAATATGGGCTGAACTTGTTAGTAAC
genomic: CGCAACTTGCTCGACAGATCCCTGACACACTATTTGGAATATTTTTTGAGgtaagccgtg ... aatattgtagGAAATCAACCATGCAGGGGCTGGTGGAATATGGGCTGAACTTGTTAGTAAC
EST: gi|29632559|gb|CB637568.1|CB637568
EST:     CGCAACTTGCTCGACAGATCCCTGACACACTATTTGGAATATTTTTTGAG                         GAAATCAACCATGCAGGGGCTGGTGGAATATGGGCTGAACTTGTTAGTAAC
genomic: CGCAACTTGCTCGACAGATCCCTGACACACTATTTGGAATATTTTTTGAGgtaagccgtg ... aatattgtagGAAATCAACCATGCAGGGGCTGGTGGAATATGGGCTGAACTTGTTAGTAAC
EST: gi|88734903|gb|CI758411.1|CI758411
EST:     CGCAACTTGCTCGACAGATCCCTGACACACTATTTGGAATATTTTTTGAG                         GAAATCAACCATGCAGGGGCTGGTGGAATATGGGCTGAACTTGTTAGTAAC
genomic: CGCAACTTGCTCGACAGATCCCTGACACACTATTTGGAATATTTTTTGAGgtaagccgtg ... aatattgtagGAAATCAACCATGCAGGGGCTGGTGGAATATGGGCTGAACTTGTTAGTAAC
EST: gi|88740536|gb|CI764044.1|CI764044
EST:     CGCAACTTGCTCGACAGATCCCTGACACACTATTTGGAATATTTTTTGAG                         GAAATCAACCATGCAGGGGCTGGTGGAATATGGGCTGAACTTGTTAGTAAC
genomic: CGCAACTTGCTCGACAGATCCCTGACACACTATTTGGAATATTTTTTGAGgtaagccgtg ... aatattgtagGAAATCAACCATGCAGGGGCTGGTGGAATATGGGCTGAACTTGTTAGTAAC
EST: gi|29638131|gb|CB643140.1|CB643140
EST:     CGCAACTTGCTCGACAGATCCCTGACACACTATTTGGAATATTTTTTGAG                         GAAATCAACCATGCAGGGGCTGGTGGAATATGGGCTGAACTTGTTAGTAAC
genomic: CGCAACTTGCTCGACAGATCCCTGACACACTATTTGGAATATTTTTTGAGgtaagccgtg ... aatattgtagGAAATCAACCATGCAGGGGCTGGTGGAATATGGGCTGAACTTGTTAGTAAC
EST: gi|88745225|gb|CI768585.1|CI768585
EST:     CGCAACTTGCTCGACAGATCCCTGACACACTATTTGGAATATTTTTTGAG                         GAAATCAACCATGCAGGGGCTGGTGGAATATGGGCTGAACTTGTTAGTAAC
genomic: CGCAACTTGCTCGACAGATCCCTGACACACTATTTGGAATATTTTTTGAGgtaagccgtg ... aatattgtagGAAATCAACCATGCAGGGGCTGGTGGAATATGGGCTGAACTTGTTAGTAAC
EST: gi|88735131|gb|CI758639.1|CI758639
EST:     CGNAACTTGCTCGACAGATCCCTGACACACTATTTGGAATATTTTTTGAG                         GAAATCAACCATGCAGGGGCTGGTGGAATATGGGCTGAACTTGTTAGTAAC
genomic: CGCAACTTGCTCGACAGATCCCTGACACACTATTTGGAATATTTTTTGAGgtaagccgtg ... aatattgtagGAAATCAACCATGCAGGGGCTGGTGGAATATGGGCTGAACTTGTTAGTAAC
EST: gi|29680212|gb|CB676487.1|CB676487
EST:     CGCAACTTGCTCGACAGATCCCTGACACACTATTTGGAATATTTTTTGAG                         GAAATCAACCATGCAGGGGCTGGTGGAATATGGGCTGAACTTGTTAGTAAC
genomic: CGCAACTTGCTCGACAGATCCCTGACACACTATTTGGAATATTTTTTGAGgtaagccgtg ... aatattgtagGAAATCAACCATGCAGGGGCTGGTGGAATATGGGCTGAACTTGTTAGTAAC
EST: gi|29674874|gb|CB671149.1|CB671149
EST:     CGCAACTTGCTCGACAGATCCCTGACACACTATTTGGAATATTTTTTGAG                         GAAATCAACCATGCAGGGGCTGGTGGAATATGGGCTGAACTTGTTAGTAAC
genomic: CGCAACTTGCTCGACAGATCCCTGACACACTATTTGGAATATTTTTTGAGgtaagccgtg ... aatattgtagGAAATCAACCATGCAGGGGCTGGTGGAATATGGGCTGAACTTGTTAGTAAC
EST: gi|29634180|gb|CB639189.1|CB639189
EST:     CGCAACTTGCTCGACAGATCCCTGACACACTATTTGGAATATTTTTTGAG                         GAAATCAACCATGCAGGGGCTGGTGGAATATGGGCTGAACTTGTTAGTAAC
genomic: CGCAACTTGCTCGACAGATCCCTGACACACTATTTGGAATATTTTTTGAGgtaagccgtg ... aatattgtagGAAATCAACCATGCAGGGGCTGGTGGAATATGGGCTGAACTTGTTAGTAAC
EST: gi|88737430|gb|CI760938.1|CI760938
EST:     CGCAACTTGCTCGACAGATCCCTGACACACTATTTGGAATATTTTTTGAG                         GAAATCAACCATGCAGGGGCTGGTGGAATATGGGCTGAACTTGTTAGTAAC
genomic: CGCAACTTGCTCGACAGATCCCTGACACACTATTTGGAATATTTTTTGAGgtaagccgtg ... aatattgtagGAAATCAACCATGCAGGGGCTGGTGGAATATGGGCTGAACTTGTTAGTAAC