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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGAGCTCCCAAGGGCACCAAGACCAACTGGGTGATGCACGAGTTCCGTCTCCACGCCAACCTCCACAACGACAACCCGAACCTTCGTCTCAACCTCAAGgtattcacattatattatttcgtttcacgcagcttaattaattacttgcttaattagctagctagctagatgtttaattatcttgaacttgacacaaattgtgacctgttctgacattttgggggggtcaag

Basic information

species Oryza sativa
transcript LOC_Os11g03370.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os11g03370.1 (Oryza sativa), 5'ss of exon 2
lower sequence: GRMZM2G018436_T01 (Zea mays), 5'ss of exon 2
GAGAGCTCCCAAGGGCACCAAGACCAACTGGGTGATGCACGAGTTCCGTCTCCACGCCAACCTCCACAACGACAACCCGAACCTTCGTCTCAACCTCAAGgtattcacattatattatttcgtttcacgcagcttaattaattacttgcttaatta-gctagctagctagatgtttaattatcttgaacttgacacaaattgtgacctgttctgacattttgggggggtcaag----
 || |||||    ||||||||||||||||||||||||||||||||||| ||| | | |||   |    ||  |  |    |||| ||  |||| | ||||||| | ||    |    ||||  |||   | |||  | |   |||||  | ||  | ||||||||  |      ||     | |||||     |  |  || |    ||||      ||||||     |        
CAGGGCTCCGCGCGGCACCAAGACCAACTGGGTGATGCACGAGTTCCGCCTCGAGGGCAAGTCCAGGCACACCTGCAACGACCTACGCTTCAATCCCAAGgtaataacg---tgcggtttcagttc-tactgct--actg-ctacttcttcaacaacgctagctaattcttctcttggacgtgttgaaaaaatcgtatctttt---ttgtttctgttttttggtttattatcttcag

upper sequence: LOC_Os11g03370.1 (Oryza sativa), 5'ss of exon 2
lower sequence: EFJ37734 (Selaginella moellendorffii), 5'ss of exon 2
------GAGAGCTCCCAAGGGCACCAAGACCAACTGGGTGATGCACGAGTTCCGTCTCCACGCCAACCTCCACAACGACAACCCGAACCTTCGTCTCAACCTCAAGgtattcacattatattatttcgttt-cacgcagcttaattaattacttgcttaattagcta-gctagctagatgtttaattatcttgaactt--gacacaaattgtgacctgttctgacattttgggggggtcaag
      ||||||||||||||||  ||||||||||||| | |||||||||| | | |||                | | | |  ||  | | | || ||||   |    || ||   |  || | || | |  | |  | | |  ||  |  ||| | ||  | ||   ||| ||  | ||  ||  | |||||  ||   | || | |||   | ||                         
CCGAGGGAGAGCTCCCAAGGGCGTCAAGACCAACTGGATCATGCACGAGTACAGGCTC---------------GAGGGCGAGGCGGCCTTCCTTCACAACTCAAGAACATCCAAGgtg-atcactttgctcactcaaatccttctttttctcttccatagattgcagtgcttgc--ggtggctagatttcttgtgctcagggcatagatttccatctc------------------------

upper sequence: LOC_Os11g03370.1 (Oryza sativa), 5'ss of exon 2
lower sequence: EFJ32111 (Selaginella moellendorffii), 5'ss of exon 2
------GAGAGCTCCCAAGGGCACCAAGACCAACTGGGTGATGCACGAGTTCCGTCTCCACGCCAACCTCCACAACGACAACCCGAACCTTCGTCTCAACCTCAAGgtattcacattatattatttcgtttcacgcagcttaattaattacttgctta---attagctagctagctagatgtttaattatcttgaactt--gacacaaattgtgacctgttctgacattttgggggggtcaag
      ||||||||||||||||  ||||||||||||| | |||||||||| | | |||                | | | |  ||  | | |  | ||||   |    || ||   |  || | || | | ||| ||  |   | | || ||     |   |||     ||| ||  | ||  ||  | |||||  ||   | || | |||   | ||                         
CCGAGGGAGAGCTCCCAAGGGCGTCAAGACCAACTGGATCATGCACGAGTACAGGCTC---------------GAGGGCGAGGCGGCCTTCCTCCACAACTCAAGAACATCCAAGgtg-atcactttgct-cactcaaatccttcattttctcttccatagattgcagtgcttgc--ggtggctagatttcttgtgctcagggcatagatttccatctc------------------------