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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TATTGCTGATGATGATGTATGGGATGATGTTTCGGATTCTCCTGGTCATGGATCCACATTAGACAGAGAGTGGGTTCACAGGCAGAACCAGTTTCATAAGgtataaacctaaggcagcaatttgattatgggaactttgccctattcctaaaggaatctgtgaaattgttatgttccatttaaatcatctttactgcaatatatttctttagttatgatttgtgaaacttgtgtttggaccagaatgtgtaaagtaatctttccatttttcctttag

Basic information

species Oryza sativa
transcript LOC_Os10g42970.2
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os10g42970.2 (Oryza sativa), 5'ss of exon 2
lower sequence: GRMZM5G833593_T01 (Zea mays), 5'ss of exon 3
TATTGCTGATGATGATGTATGGGATGATGTTTCGGATTCTCCTGGTCATGGATCCACATTAGACAGAGAGTGGGTTCACAGGCAGAACCAGTTTCATAAGgtataaacctaaggcagcaatttgattatgggaactttgccctattcctaaaggaatctgtgaaattgttatgttccatttaaatcatctttactgcaatatatttctttagttatgatttgtgaaacttgtgtttggaccagaatgtgtaaagtaatctttccatttttcctttag
          |||||||| ||||| |||||||| ||||||| ||| || |  || || ||||||||||| ||| | |||||||||||||||||||| ||||||| || |     |    | || ||| ||| |         || | ||||       | || | || || |  |   | |   | ||     | | ||| |      ||| || ||  || |||   ||   | | |                                       
----------GATGATGTGTGGGAAGATGTTTCAGATTCTCATGGGCACGCGTCTACCTTAGACAGAGAATGGATCCACAGGCAGAACCAGTTTCAAAAGgtattaatcacccccctagagtttatt-tggaacgcagttgttaatgctaactactcttttgcagttttttt--tgtgtgtggctgata---gcagaaatgttaaaaattaattttgccttttga---tttcatctag---------------------------------------

upper sequence: LOC_Os10g42970.2 (Oryza sativa), 5'ss of exon 2
lower sequence: GRMZM5G833593_T05 (Zea mays), 5'ss of exon 3
TATTGCTGATGATGATGTATGGGATGATGTTTCGGATTCTCCTGGTCATGGATCCACATTAGACAGAGAGTGGGTTCACAGGCAGAACCAGTTTCATAAGgtataaacctaaggcagcaatttgattatgggaactttgccctattcctaaaggaatctgtgaaattgttatgttccatttaaatcatctttactgcaatatatttctttagttatgatttgtgaaacttgtgtttggaccagaatgtgtaaagtaatctttccatttttcctttag
| | |   | |||||||| ||||| |||||||| ||||||| ||| || |  || || ||||||||||| ||| | |||||||||||||||||||| ||||||| || |     |    | || ||| ||| |         || | ||||       | || | || || |  |   | |   | ||     | | ||| |      ||| || ||  || |||   ||   | | |                                       
TGTCGACCAGGATGATGTGTGGGAAGATGTTTCAGATTCTCATGGGCACGCGTCTACCTTAGACAGAGAATGGATCCACAGGCAGAACCAGTTTCAAAAGgtattaatcacccccctagagtttatt-tggaacgcagttgttaatgctaactactcttttgcagttttttt--tgtgtgtggctgata---gcagaaatgttaaaaattaattttgccttttga---tttcatctag---------------------------------------