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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGGTGGCTGCCCCTCTTCTTCGTCCCCTCCCTCGTCGTCCTGCCGCTTGCCGTCAGGGACGTCTCGCCTGCTTCTGCCCTCAAGATCCTCTTCATCACATgtaataattaactactgtaactaacactactcttcttaatttataattcgttccacgtacgtacagatgatcgacatgactctgctctgctcatgaattttcttcttttaatattaataatttactag

Basic information

species Oryza sativa
transcript LOC_Os10g42780.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88574922|gb|CI666691.1|CI666691
EST:     CGTCAGGGACGTCTCGCCTGCTTCTGCCCTCAAGATCCTCTTCATCACAT                         TTGGTGGCTGGTTTGCTTCACTGGTGGTGG
genomic: CGTCAGGGACGTCTCGCCTGCTTCTGCCCTCAAGATCCTCTTCATCACATgtaataatta ... aatttactagTTGGTGGCTGGTTTGCTTCACTGGTGGTGG
EST: gi|29660093|gb|CB656368.1|CB656368
EST:     CGTCAGGGACGTCTCGCCTGCTTCTGCCCTCAAGATCCTCTTCATCACAT                         TTGGTGGCTGGTTTGCTTCACTGGTGGTGGCTGGTTACACGGCGCTGAGTG
genomic: CGTCAGGGACGTCTCGCCTGCTTCTGCCCTCAAGATCCTCTTCATCACATgtaataatta ... aatttactagTTGGTGGCTGGTTTGCTTCACTGGTGGTGGCTGGTTACACGGCGCTGAGTG
EST: gi|29676078|gb|CB672353.1|CB672353
EST:     CGTCAGGGACGTCTCGCCTGCTTCTGCCCTCAAGATCCTCTTCATCACAT                         TTGGTGGCTGGTTTGCTTCACTGGTGGTGGCTGGTTACACGGCGCTGAGTG
genomic: CGTCAGGGACGTCTCGCCTGCTTCTGCCCTCAAGATCCTCTTCATCACATgtaataatta ... aatttactagTTGGTGGCTGGTTTGCTTCACTGGTGGTGGCTGGTTACACGGCGCTGAGTG
EST: gi|88385895|gb|CI568563.1|CI568563
EST:     CGTCAGGGACGTCTCGCCTGCTTCTGCCCTCAAGATC-TCTTCATCACAT                         TTGGTGGCTGGTTTGCTTCACTGGTGGTGGCTGGTTACA-GGCGGCTGA
genomic: CGTCAGGGACGTCTCGCCTGCTTCTGCCCTCAAGATCCTCTTCATCACATgtaataatta ... aatttactagTTGGTGGCTGGTTTGCTTCACTGGTGGTGGCTGGTTACACGGCG-CTGA
EST: gi|58590558|gb|CF988866.1|CF988866
EST:     CGTCAGGGACGTCTCGCCTGCTTCTGCCCTCAAGATCCTCTTCATCACAT                         TTGGTGGCTGGTTTGCTTCACTGGTGGTGGCTGGTTACACGGCGCTGAGTG
genomic: CGTCAGGGACGTCTCGCCTGCTTCTGCCCTCAAGATCCTCTTCATCACATgtaataatta ... aatttactagTTGGTGGCTGGTTTGCTTCACTGGTGGTGGCTGGTTACACGGCGCTGAGTG