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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCAAGAACCCGACCTGGGCCTCCGTCACCTACGGCGTCTTCCTCTGCATCGACTGCTCTGCCGTCCACCGTAGCCTCGGCGTTCACGTCTCCTTCGTCAGgttccccctcatacacccccgcactccttctatgtctgcctgccttacaattcatatcatttactgaggtgccttgagctaatcatgtatttttttctct...

Basic information

species Oryza sativa
transcript LOC_Os10g42420.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os10g42420.1 (Oryza sativa), 5'ss of exon 2
lower sequence: GRMZM2G134045_T02 (Zea mays), 5'ss of exon 2
CCAAGAACCCGACCTGGGCCTCCGTCACCTACGGCGTCTTCCTCTGCATCGACTGCTCTGCCGTCCACCGTAGCCTCGGCGTTCACGTCTCCTTCGTCAGgttccccctcat-acacccccgcactccttctatgtctgcctgccttacaattcatatcatttactgaggtgccttgagctaatcatgtatttttttctct
||||||||||||| ||||| |||||||||||||| ||||||||||||||||||||||| || || ||||| ||||||||||| |||||||||||||||||||  || | | |  |  | || |||  |  ||   ||  | | ||||   |  | | ||  |    | ||  |  ||  |    |     |   |     |
CCAAGAACCCGACGTGGGCGTCCGTCACCTACGGTGTCTTCCTCTGCATCGACTGCTCGGCGGTGCACCGCAGCCTCGGCGTCCACGTCTCCTTCGTCAGgtcgcctcgcctcgcctcacctcacctcacctgcttcc-ctttccttctcacacttgtccatgtacgtggaactgtggccatgcccccggtgcatgatagt

upper sequence: LOC_Os10g42420.1 (Oryza sativa), 5'ss of exon 2
lower sequence: GRMZM2G094390_T01 (Zea mays), 5'ss of exon 2
CCAAGAACCCGACCTGGGCCTCCGTCACCTACGGCGTCTTCCTCTGCATCGACTGCTCTGCCGTCCACCGTAGCCTCGGCGTTCACGTCTCCTTCGTCAGgttccc---cctcatacacccccgcactccttctatgtctgcctgccttacaattcatatcatt-tactgaggtgccttgagctaatcatgtatttttttctct
||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| || |  ||||| ||||||||||| |||||||||||||||||||  ||   |||||    |  |    ||| |   |   ||| |  | |       | | |     | |  |  ||| |  ||   ||  |||| |  | |    
CCAAGAACCCGACGTGGGCGTCCGTCACCTACGGCGTCTTCCTCTGCATCGACTGCTCGGCGGCGCACCGCAGCCTCGGCGTCCACGTCTCCTTCGTCAGgtcgcctcgcctcacctgcttctcttctcttctcacacctgtccacgtacgtggacctgtggccatgcctaaatgcttgtagt--atactgtactaatctgc--

upper sequence: LOC_Os10g42420.1 (Oryza sativa), 5'ss of exon 2
lower sequence: GLYMA08G36700.2 (Glycine max), 5'ss of exon 2
CCAAGAACCCGACCTGGGCCTCCGTCACCTACGGCGTCTTCCTCTGCATCGACTGCTCTGCCGTCCACCGTAGCCTCGGCGTTCACGTCTCCTTCGT----CAGgttccccctcatacacccccgcactccttctatgtctgcctgccttacaattcatatcatttactgaggtgccttgag--ctaatcatgtatttttttctct
| |||||||| |||||||| |||||||| || ||  |||| ||||||||||| ||||| ||||| ||||| || |||||||| ||| ||  ||||||    || |||    || ||       |  |       |   | ||      || |  | |  |  |||   ||       ||||   || ||  |||   |  ||    
CGAAGAACCCTACCTGGGCGTCCGTCACGTATGGGATCTTTCTCTGCATCGATTGCTCCGCCGTACACCGCAGTCTCGGCGTGCACATCAGCTTCGTGAGgcaagtttttgctgattttgtttca-atggtgaatcaatttgttaatttttctgtgcggaa-attgtttgtaaccttttgaaatctgattgtgtggctgatt----

upper sequence: LOC_Os10g42420.1 (Oryza sativa), 5'ss of exon 2
lower sequence: GLYMA01G12340.1 (Glycine max), 5'ss of exon 2
CCAAGAACCCGACCTGGGCCTCCGTCACCTACGGCGTCTTCCTCTGCATCGACTGCTCTGCCGTCCACCGTAGCCTCGGCGTTCACGTCTCCTTCGT----CAGgttccccctcatacacccccgcactccttctatgtctgcctgccttacaattcatatcatttactgaggtgccttgagctaatcatgtatttttttctct
| |||||||| |||||||| |||||||| || ||  |||||||||||||||| ||||| ||||| ||||| || |||||||| ||| ||  ||||||    || |||    || ||        | |       | ||| ||      ||  |  |      ||||     |||      |  | ||  |||   |  ||||  
CGAAGAACCCTACCTGGGCGTCCGTCACGTATGGGATCTTCCTCTGCATCGATTGCTCCGCCGTTCACCGCAGTCTCGGCGTGCACATCAGCTTCGTGAGgcaagtttttgctgat-tttgtttgaatggtgaatctgtttgttgattttttatgtgcggaaatttgtatcggt-ttgcaatatgattgtgtggctgattct--

upper sequence: LOC_Os10g42420.1 (Oryza sativa), 5'ss of exon 2
lower sequence: GLYMA01G12340.2 (Glycine max), 5'ss of exon 2
-----CCAAGAACCCGACCTGGGCCTCCGTCACCTACGGCGTCTTCCTCTGCATCGACTGCTCTGCCGTCCACCGTAGCCTCGGCGTTCACGTCTCCTTCGTCAGgttccccctcatacacccccgcactccttctatgtctgcctgccttacaattcatatcatttactgaggtgcct-tgagctaatcatgtatttttttctct-
     | |||||||| |||||||| |||||||| || ||  |||||||||||||||| ||||| ||||| ||||| || |||||||| ||| ||  |||||| |||       |     |     |      |  |   ||||  ||       |||  | | || | | ||  |   | |  | |    || |  || | |  || 
CAATGCGAAGAACCCTACCTGGGCGTCCGTCACGTATGGGATCTTCCTCTGCATCGATTGCTCCGCCGTTCACCGCAGTCTCGGCGTGCACATCAGCTTCgtgaggcaagtttttgctgatttt-gtttgaatggtgaatctgtttgtt----gatt--ttttatgtgcggaaatttgtatcggtttgcaatatgattgtgtggctg

upper sequence: LOC_Os10g42420.1 (Oryza sativa), 5'ss of exon 2
lower sequence: Vv02s0012g01330.t01 (Vitis vinifera), 5'ss of exon 2
CCAAGAACCCGACCTGGGCCTCCGTCACCTACGGCGTCTTCCTCTGCATCGACTGCTCTGCCGTCCACCGTAGCCTCGGCGTTCACGTCTCCTTCGTCAGgt--tccccctcatacacccccgcactcct-tctatgtctgcctgcctta-caattcatatcatttactgaggtgccttgagctaatcatgtatttttttctct
| ||||||||||| ||||| |||||||| || ||  |||||||||||||||||||||| ||||| ||  | || || || |||||| ||  |||||||||||  |  |  |  |        |   |    || |||  |    |  ||  || ||||  |   | | |  | |   | || |||    | |  |||    |  
CGAAGAACCCGACTTGGGCGTCCGTCACGTATGGGATCTTCCTCTGCATCGACTGCTCCGCCGTGCATAGGAGTCTTGGGGTTCACATCAGCTTCGTCAGgtgatttcaattttgagttttggtggtttgatccatgatttagggttttggcagttcaatttggtgattt-gatatttcga-ctagggttttgatttaagat--

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88391695|gb|CI600884.1|CI600884
EST:     GACTGCTCTGCCGTCCACCGTAGCCTCGGCGTTCACGTCTCCTTCGTCAG                         GTCAACAAATTTGGATTCGTGGACCCCAGAACAATTGAAAATGATGGTTTA
genomic: GACTGCTCTGCCGTCCACCGTAGCCTCGGCGTTCACGTCTCCTTCGTCAGgttccccctc ... caatctgcagGTCAACAAATTTGGATTCGTGGACCCCAGAACAATTGAAAATGATGGTTTA
EST: gi|88443725|gb|CI591950.1|CI591950
EST:     GATTGCTCTGCCGTCCACCGTAGCCTCGGCGTTCACGTCTCCTTCGTCGG                         GTCAAAAAATTTGGATTCGTGGACCCCAGAACAATTGAAAATGATGGTTTA
genomic: GACTGCTCTGCCGTCCACCGTAGCCTCGGCGTTCACGTCTCCTTCGTCAGgttccccctc ... caatctgcagGTCAACAAATTTGGATTCGTGGACCCCAGAACAATTGAAAATGATGGTTTA
EST: gi|88337707|gb|CI632209.1|CI632209
EST:     GACTGCTCTGCCGTCCACCGTAGCCTCGGCGTTCACGTCTCCTTCGTCAG                         GTCAACAAATTTGGATTCGTGGACCCCAGAACAATTGAAAATGATG
genomic: GACTGCTCTGCCGTCCACCGTAGCCTCGGCGTTCACGTCTCCTTCGTCAGgttccccctc ... caatctgcagGTCAACAAATTTGGATTCGTGGACCCCAGAACAATTGAAAATGATG
EST: gi|88369628|gb|CI582823.1|CI582823
EST:     GACTGCTCTGCCGTCCACCGTAGCCTCGGCGTTCACGTCTCCTTCGTCAG                         GTCAACAAATTTGGATTCGTGGACCCCAGAACAATTGAAAATGATGGTTTA
genomic: GACTGCTCTGCCGTCCACCGTAGCCTCGGCGTTCACGTCTCCTTCGTCAGgttccccctc ... caatctgcagGTCAACAAATTTGGATTCGTGGACCCCAGAACAATTGAAAATGATGGTTTA
EST: gi|58668257|gb|CK056943.1|CK056943
EST:     GACTGCTCTGCCGTCCACCGTAGCCTCGGCGTTCACGTCTCCTTCGTCAG                         GTCAACAAATTTGGATTCGTGGACCCCAGAACAATTGAAAATGATGCTTTA
genomic: GACTGCTCTGCCGTCCACCGTAGCCTCGGCGTTCACGTCTCCTTCGTCAGgttccccctc ... caatctgcagGTCAACAAATTTGGATTCGTGGACCCCAGAACAATTGAAAATGATGGTTTA
EST: gi|58688164|gb|CK076851.1|CK076851
EST:     GACTGCTCTGCCGTCCACCGTAGCCTCGGCGTTCACGTCTCCTTCGTCAG                         GTCAACAAATTTGGATTCGTGGACCCCAGAACAATTGAAAATGATGGTTTA
genomic: GACTGCTCTGCCGTCCACCGTAGCCTCGGCGTTCACGTCTCCTTCGTCAGgttccccctc ... caatctgcagGTCAACAAATTTGGATTCGTGGACCCCAGAACAATTGAAAATGATGGTTTA
EST: gi|88759874|gb|CI769430.1|CI769430
EST:     GACTGCTCTGCCGTCCACCGTAGCCTCGGCGTTCACGTCTCCTTCGTCAG                         GTCAACAAATTTGGA
genomic: GACTGCTCTGCCGTCCACCGTAGCCTCGGCGTTCACGTCTCCTTCGTCAGgttccccctc ... caatctgcagGTCAACAAATTTGGA
EST: gi|88353012|gb|CI630190.1|CI630190
EST:     GACTGCTCTGCCGTCCAACGTAGCCTCGGCGTTCACGTCTCCTTCGTCAG                         GTCAACAAATTTGGATTCGTGGACCCCAG
genomic: GACTGCTCTGCCGTCCACCGTAGCCTCGGCGTTCACGTCTCCTTCGTCAGgttccccctc ... caatctgcagGTCAACAAATTTGGATTCGTGGACCCCAG
EST: gi|88424735|gb|CI606534.1|CI606534
EST:     GACTGCTCTGCCGTCCACCGTAGCCTCGGCGTTCACGTCTCCTTCGTCAG                         GTCAACAAATTTGGATT-GTGGACCCCAGAACAATTGAAAATGATGGTTTA
genomic: GACTGCTCTGCCGTCCACCGTAGCCTCGGCGTTCACGTCTCCTTCGTCAGgttccccctc ... caatctgcagGTCAACAAATTTGGATTCGTGGACCCCAGAACAATTGAAAATGATGGTTTA
EST: gi|88377396|gb|CI602881.1|CI602881
EST:     GACTGCTCTGCCGTCCACCGTAGCCTCGGTGTTCACGTCTCCTTCGTCAG                         GTCAACAAATTTGGATTCGTGGACCCCAGAACAATTGAAAATGATGGTTTA
genomic: GACTGCTCTGCCGTCCACCGTAGCCTCGGCGTTCACGTCTCCTTCGTCAGgttccccctc ... caatctgcagGTCAACAAATTTGGATTCGTGGACCCCAGAACAATTGAAAATGATGGTTTA
EST: gi|86829640|gb|CI286805.1|CI286805
EST:     GACTGCTCTGCCGTCCACCGTAGCCTCGGCGTTCACGTCTCCTTCGTCAG                         GTCAACAAATTTGGATTCGTGGACCCCAGAACAATTGAAAATGATGGTTTA
genomic: GACTGCTCTGCCGTCCACCGTAGCCTCGGCGTTCACGTCTCCTTCGTCAGgttccccctc ... caatctgcagGTCAACAAATTTGGATTCGTGGACCCCAGAACAATTGAAAATGATGGTTTA
EST: gi|88413308|gb|CI581323.1|CI581323
EST:     GACTGCTCTGCCGTCCACCGTAGCCTCGGCGTTCACGTCTCCTTCGTCAG                         GTCAACAAATTTGGATTCGTGGACCCCAGAACAATTGAAAATGATGGTTTA
genomic: GACTGCTCTGCCGTCCACCGTAGCCTCGGCGTTCACGTCTCCTTCGTCAGgttccccctc ... caatctgcagGTCAACAAATTTGGATTCGTGGACCCCAGAACAATTGAAAATGATGGTTTA
EST: gi|88364370|gb|CI612319.1|CI612319
EST:     GACTGCTCTGCCGTCCACCGTAGCCTCGGCGTTCACGTCTCCTTCGTCAG                         GTCAACAAATTTGGATTCGTGGACCCCAGAACAATTGAAAATGATGGTTTA
genomic: GACTGCTCTGCCGTCCACCGTAGCCTCGGCGTTCACGTCTCCTTCGTCAGgttccccctc ... caatctgcagGTCAACAAATTTGGATTCGTGGACCCCAGAACAATTGAAAATGATGGTTTA
EST: gi|88390821|gb|CI611047.1|CI611047
EST:     GACTGCTCTGCCGTCCACCGTAGCCTCGGCGTTCACGTCTCCTTCGTCAG                         GTCAACAAATTTGGATTCGTGGACCCCAGAACAATTGAAAATGATGGTTTA
genomic: GACTGCTCTGCCGTCCACCGTAGCCTCGGCGTTCACGTCTCCTTCGTCAGgttccccctc ... caatctgcagGTCAACAAATTTGGATTCGTGGACCCCAGAACAATTGAAAATGATGGTTTA
EST: gi|88371076|gb|CI597553.1|CI597553
EST:     GACTGCTCTGCCGTCCACCGTAGCCTCGGCGTTCAAGTCTCCTTCGTCAG                         GTCAACAAATTTGGATTCGTGGACCCCAGAACAATTGAAAATGATGGTTTA
genomic: GACTGCTCTGCCGTCCACCGTAGCCTCGGCGTTCACGTCTCCTTCGTCAGgttccccctc ... caatctgcagGTCAACAAATTTGGATTCGTGGACCCCAGAACAATTGAAAATGATGGTTTA
EST: gi|88391745|gb|CI603264.1|CI603264
EST:     GACTGCTCTGCCGTCCACCGTAGCCTCGGCGTTCACGTCTCCTTCGTCAG                         GTCAACAAATTTGGATTCGTGGACCCCAGAACAATTGAAAATGATGGTTTA
genomic: GACTGCTCTGCCGTCCACCGTAGCCTCGGCGTTCACGTCTCCTTCGTCAGgttccccctc ... caatctgcagGTCAACAAATTTGGATTCGTGGACCCCAGAACAATTGAAAATGATGGTTTA
EST: gi|88345727|gb|CI630995.1|CI630995
EST:     GACTGCTCTGCCGTCCACCGTAGCCTCGGCGTTCACGTCTCCTTCGTCAG                         GTCAACAAATTTGGATTCGTGGACCCCAGAACAATTGAAAATGATGGTTTA
genomic: GACTGCTCTGCCGTCCACCGTAGCCTCGGCGTTCACGTCTCCTTCGTCAGgttccccctc ... caatctgcagGTCAACAAATTTGGATTCGTGGACCCCAGAACAATTGAAAATGATGGTTTA
EST: gi|88358633|gb|CI617931.1|CI617931
EST:     GACTGCTCTGCCGTCCACCGTAGCCTCGGCGTTCACGTCTCCTTCGTCAG                         GTCAACAAATTTGGATTCGTGGACCCCAGAACAATTGAAAATGATGGTTTA
genomic: GACTGCTCTGCCGTCCACCGTAGCCTCGGCGTTCACGTCTCCTTCGTCAGgttccccctc ... caatctgcagGTCAACAAATTTGGATTCGTGGACCCCAGAACAATTGAAAATGATGGTTTA
EST: gi|88364650|gb|CI612465.1|CI612465
EST:     GACTGCTCTGCCGTCCACCGTAGCCTCGGCGTTCACGTCTCCTTCGTCAG                         GTCAACAAATTTGGATTCGTGGACCCCAGAACAATTGAAAATGATGGTTTA
genomic: GACTGCTCTGCCGTCCACCGTAGCCTCGGCGTTCACGTCTCCTTCGTCAGgttccccctc ... caatctgcagGTCAACAAATTTGGATTCGTGGACCCCAGAACAATTGAAAATGATGGTTTA
EST: gi|88401347|gb|CI585903.1|CI585903
EST:     GACTGCTCTGCCGTCCACCGTAGCCTCGGCGTTCACGTCTCCTTCGTCAG                         GTCAACAAATTTGGATTCGTGGACCCCAGAACAATTGAAAATGATGGTTTA
genomic: GACTGCTCTGCCGTCCACCGTAGCCTCGGCGTTCACGTCTCCTTCGTCAGgttccccctc ... caatctgcagGTCAACAAATTTGGATTCGTGGACCCCAGAACAATTGAAAATGATGGTTTA
EST: gi|88363963|gb|CI607273.1|CI607273
EST:     GACTGCTCTGCCGTCCACCGTAGCCTCGGCGT-CACGTCTCCTTCGTCAG                         GTCAACAAATTTGGATTCGTGGACCCCAGAACAATTGAAAATGATGGTTTA
genomic: GACTGCTCTGCCGTCCACCGTAGCCTCGGCGTTCACGTCTCCTTCGTCAGgttccccctc ... caatctgcagGTCAACAAATTTGGATTCGTGGACCCCAGAACAATTGAAAATGATGGTTTA
EST: gi|117230026|gb|CT846403.1|CT846403
EST:     GACTGCTCTGCCGTCCACCGTAGCCTCGGCGTTCACGTCTCCTTCGTCAG                         GTCAACAAATTTGGATTCGTGGACCCCAGAACAATTGAAAATGATGGTTTA
genomic: GACTGCTCTGCCGTCCACCGTAGCCTCGGCGTTCACGTCTCCTTCGTCAGgttccccctc ... caatctgcagGTCAACAAATTTGGATTCGTGGACCCCAGAACAATTGAAAATGATGGTTTA
EST: gi|88358855|gb|CI619359.1|CI619359
EST:     GACTGCTCTGCCGTCCACCGTAGCCTCGGCGTTCACGTCTCCTTCGTCAG                         GTCAACAAATTTGGATTCGTGGACCCCAGAACAATTGAAAATGATGGTTTA
genomic: GACTGCTCTGCCGTCCACCGTAGCCTCGGCGTTCACGTCTCCTTCGTCAGgttccccctc ... caatctgcagGTCAACAAATTTGGATTCGTGGACCCCAGAACAATTGAAAATGATGGTTTA
EST: gi|88337650|gb|CI632152.1|CI632152
EST:     GACTGCTCTGCCGTCCACCGTAGCCTCGGCGTTCACGTCTCCTTCGTCAG                         GTCAACAAATTTGGATTCGTGG
genomic: GACTGCTCTGCCGTCCACCGTAGCCTCGGCGTTCACGTCTCCTTCGTCAGgttccccctc ... caatctgcagGTCAACAAATTTGGATTCGTGG
EST: gi|88305707|gb|CI632074.1|CI632074
EST:     GACTGCTCTGCCGTCCACCGTAGCCTCGGCGTTCACGTCTCCTTCGTCAG                         GTCAACAAATTTGGATTCGTGGA
genomic: GACTGCTCTGCCGTCCACCGTAGCCTCGGCGTTCACGTCTCCTTCGTCAGgttccccctc ... caatctgcagGTCAACAAATTTGGATTCGTGGA
EST: gi|88372429|gb|CI610752.1|CI610752
EST:     GACTGCTCTGCCGTCCACCGTAGCCTCGGCGTTCACGTCTCCTTCGTCAG                         GTCAACAAATTTGGATTCGTGGACCCCAGAACAATTGAAAATGATGGTTTA
genomic: GACTGCTCTGCCGTCCACCGTAGCCTCGGCGTTCACGTCTCCTTCGTCAGgttccccctc ... caatctgcagGTCAACAAATTTGGATTCGTGGACCCCAGAACAATTGAAAATGATGGTTTA
EST: gi|33654041|gb|CF276655.1|CF276655
EST:     GACTGCTCTGCCGTCCACCGTAGCCTCGGCGTTCACGTCTCCTTCGTCAG                         GTCAACAAATTTGGATTCGTGGACCCCAGAACAATTGAAAATGATGGTTTA
genomic: GACTGCTCTGCCGTCCACCGTAGCCTCGGCGTTCACGTCTCCTTCGTCAGgttccccctc ... caatctgcagGTCAACAAATTTGGATTCGTGGACCCCAGAACAATTGAAAATGATGGTTTA
EST: gi|88408013|gb|CI589042.1|CI589042
EST:     GACTGCTCTGCCGTCCACCGTAGCCTCGGCGTTCACGTCTCCTTCGTCAG                         GTCAACAAATTTGGATTCGTGGACCCCAGAACAATTGAAAATGATGGTTTA
genomic: GACTGCTCTGCCGTCCACCGTAGCCTCGGCGTTCACGTCTCCTTCGTCAGgttccccctc ... caatctgcagGTCAACAAATTTGGATTCGTGGACCCCAGAACAATTGAAAATGATGGTTTA
EST: gi|88727868|gb|CI749380.1|CI749380
EST:     GACTGCTCTGCCGTCCACCGTAGCCTCGGCGTTCACGTCTCCTTCGTCAG                         GTCAACAAATTTGGATTCG
genomic: GACTGCTCTGCCGTCCACCGTAGCCTCGGCGTTCACGTCTCCTTCGTCAGgttccccctc ... caatctgcagGTCAACAAATTTGGATTCG
EST: gi|88397242|gb|CI580752.1|CI580752
EST:     GACTGCTCTGCCGTCCACCGTAGCCTCGGCGTTCACGTCTCCTTCGTCAG                         GTCAACAAATTTGGATTCGTGGACCCCAGAACAATTGAAAATGATGGTTTA
genomic: GACTGCTCTGCCGTCCACCGTAGCCTCGGCGTTCACGTCTCCTTCGTCAGgttccccctc ... caatctgcagGTCAACAAATTTGGATTCGTGGACCCCAGAACAATTGAAAATGATGGTTTA
EST: gi|84117391|gb|CD151158.1|CD151158
EST:     GACTGCTCTGCCGTCCACCGTAGCCTCGGCGTTCACGTCTCCTTCGTCAG                         GTCAACAAATTTGGATTCGTGGACCCCAGAACAATTGAAAATGATGGTTTA
genomic: GACTGCTCTGCCGTCCACCGTAGCCTCGGCGTTCACGTCTCCTTCGTCAGgttccccctc ... caatctgcagGTCAACAAATTTGGATTCGTGGACCCCAGAACAATTGAAAATGATGGTTTA
EST: gi|88346915|gb|CI628585.1|CI628585
EST:     GACTGCTCTGCNGTCCACCGTAGCCTCGGCGTTCACGTCTCCTTCGTCAG                         GTTAACAAATTCGGATTCGTGGACCCCAGAACAATTGAAAATGA
genomic: GACTGCTCTGCCGTCCACCGTAGCCTCGGCGTTCACGTCTCCTTCGTCAGgttccccctc ... caatctgcagGTCAACAAATTTGGATTCGTGGACCCCAGAACAATTGAAAATGA
EST: gi|88348778|gb|CI631472.1|CI631472
EST:     GACTGCTCTGCCGTCCACCGTAGCCTCGGCGTTCACGTCTCCTTCGTCAG                         GTTAACAAATTTGGATTCGTGGACCCCAGAACAATTGAAAATGATGG
genomic: GACTGCTCTGCCGTCCACCGTAGCCTCGGCGTTCACGTCTCCTTCGTCAGgttccccctc ... caatctgcagGTCAACAAATTTGGATTCGTGGACCCCAGAACAATTGAAAATGATGG
EST: gi|88433892|gb|CI584387.1|CI584387
EST:     GACTGCTCTGCCGTCCACCGTAGCCTCGGCGTTCACGTCTCCTTCGTCAG                         GTCAACAAATTTGGATTCGTGGACCCCAGAACAATTGAAAATGATGGTTTA
genomic: GACTGCTCTGCCGTCCACCGTAGCCTCGGCGTTCACGTCTCCTTCGTCAGgttccccctc ... caatctgcagGTCAACAAATTTGGATTCGTGGACCCCAGAACAATTGAAAATGATGGTTTA
EST: gi|88386866|gb|CI629193.1|CI629193
EST:     GACTGCTCTGCCGTCCACCGTAGCCTCGGCGTTCACGTCTCCTTCGTCAG                         GTCAACAAATTTGGATTCGTGGACCCCAG
genomic: GACTGCTCTGCCGTCCACCGTAGCCTCGGCGTTCACGTCTCCTTCGTCAGgttccccctc ... caatctgcagGTCAACAAATTTGGATTCGTGGACCCCAG
EST: gi|88692834|gb|CI736409.1|CI736409
EST:     GACTGCTCTGCCGTCCACCGTAGCCTCGGCGTTCACGTCTCCTTCGTCAG                         GTCAACAAATTTGGATTCGTGGACCCCAGAAC
genomic: GACTGCTCTGCCGTCCACCGTAGCCTCGGCGTTCACGTCTCCTTCGTCAGgttccccctc ... caatctgcagGTCAACAAATTTGGATTCGTGGACCCCAGAAC
EST: gi|88421136|gb|CI566977.1|CI566977
EST:     GACTGCTCTGCCGTCCACCGTAGCCTCGGCGTTCACGTCTCCTTCGTCAG                         GTCAACAAATTTGGATTCGTGGACCCCAGAACAATTGAAAATGATGGTTTA
genomic: GACTGCTCTGCCGTCCACCGTAGCCTCGGCGTTCACGTCTCCTTCGTCAGgttccccctc ... caatctgcagGTCAACAAATTTGGATTCGTGGACCCCAGAACAATTGAAAATGATGGTTTA
EST: gi|88451464|gb|CI565517.1|CI565517
EST:     GACTGCTCTGCCGTCCACCGTAGCCTCGGCGTTCAT-TCTCCTTCGTCAG                         GTCAACAAATTTGGATTCGTGGACCCCAGAACAATTGAAAATGATGGTTTA
genomic: GACTGCTCTGCCGTCCACCGTAGCCTCGGCGTTCACGTCTCCTTCGTCAGgttccccctc ... caatctgcagGTCAACAAATTTGGATTCGTGGACCCCAGAACAATTGAAAATGATGGTTTA
EST: gi|88347066|gb|CI631146.1|CI631146
EST:     GACTGCTCTGCCGTCCACCGTAGCCTCGGCGTTCACGTCTCCTTCGTCAG                         GTCAACAAATTTGGATTCGTGGACCCCAGAACAATT
genomic: GACTGCTCTGCCGTCCACCGTAGCCTCGGCGTTCACGTCTCCTTCGTCAGgttccccctc ... caatctgcagGTCAACAAATTTGGATTCGTGGACCCCAGAACAATT
EST: gi|29635809|gb|CB640818.1|CB640818
EST:     GACTGCTCTGCCGTCCACCGTAGCCTCGGCGTTCACGTCTCCTTCGTCAG                         GTCAACAAATTTGGATTCGTGGACCCCAGAACAATTGAAAATGATGGTTTA
genomic: GACTGCTCTGCCGTCCACCGTAGCCTCGGCGTTCACGTCTCCTTCGTCAGgttccccctc ... caatctgcagGTCAACAAATTTGGATTCGTGGACCCCAGAACAATTGAAAATGATGGTTTA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 72 (upstream exon), 49 (downstream exon)
Score: 30

CCAAGAACCCGACCTGGGCCTCCGTCACCTACGGCGTCTTCCTCTGCATCGACTGCTCTGCCGTCCACCGTAGCCTCGGCGTTCACGTCTCCTTCGTCAGgttccccctc ... caatctgcagGTCAACAAATTTGGATTCGTGGACCCCAGAACAATTGAAAATGATGGTTTATGGAGGTAACAACCGTGCACAAGCTTTCTTCAAGCAGCATGGTTGGACA




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Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CCAAGAACCCGACCTGGGCCTCCGTCACCTACGGCGTCTTCCTCTGCATCGACTGCTCTGCCGTCCACCGTAGCCTCGGCGTTCACGTCTCCTTCGTCAGgttccccctcatacacccccgcactccttctatgtctgcctgccttacaattcatatcatttactgaggtgccttgagctaatcatgtatttttttctct

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -caccccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctccttc