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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCCAAAATGCGTGCATTGGAAGGCAAGTTCAAGGAGCTGAGGGATGAGCAATGTTCTTACGACAATACATTGATTTGTTTGAATAAAATGTGGAATCAGgttcattcatctgtctttcatactgatgtaaattctattcgatgcatttttttttccagttcaatatgtttctgatgcacttctgtgaattatag

Basic information

species Oryza sativa
transcript LOC_Os10g41590.2
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os10g41590.1 (Oryza sativa), 5'ss of exon 2
lower sequence: GRMZM2G341271_T03 (Zea mays), 5'ss of exon 3
GTCCAAAATGCGTGCATTGGAAGGCAAGTTCAAGGAGCTGAGGGATGAGCAATGTTCTTACGACAATACATTGATTTGTTTGAATAAAATGTGGAATCAGgttcattcatctgtctttcatactgatgtaaattctattcgatgcatttttttttccagttcaatatgtttctgat-gcacttctgtgaattatag
|||| |||||| |||||||||  |||||||||||||||| || ||||| ||||||||||| ||||| ||  |||||| |||||||||| ||||||||||||||| ||| | ||  | | |||   |   || |||| |   ||| |  ||||   ||| | ||| |||||||| ||      | |||  |||||||
GTCCGAAATGCATGCATTGGAGCGCAAGTTCAAGGAGCTTAGTGATGATCAATGTTCTTATGACAAGACTCTGATTTCTTTGAATAAACTGTGGAATCAGgttccttcctttgcgtctgatatgaa---aatttctgt---atggacctttt---ccactccaacatgtttctcattatggctatgtatattatag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|2312286|gb|C28441.1|C28441
EST:     AATGTTCTTACGACAATACATTGATTTGTTTGAATAAAATGTGGAATCAG                         CTGATTGATGATTTAGTGCTGCTTGGGGTTCGAGCTGGTGGGGATTTAAAC
genomic: AATGTTCTTACGACAATACATTGATTTGTTTGAATAAAATGTGGAATCAGgttcattcat ... tgaattatagCTGATTGATGATTTAGTGCTGCTTGGGGTTCGAGCTGGTGGGGATTTAAAC