1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
GGAGGCGGGCGATCCGAGCAAGAGGAAGCCGTATCTCCCTCCCGACAAGCAATTCCTCGTCACCAGGAACGgtatgctgattctaaattggttctatttcatcttgtgctaggattcgatggaatgctgcattgggtgacatgattgttatgctagtttccactggtcttg...
species | Oryza sativa |
transcript | LOC_Os10g41110.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: GAGGAAGCCGTATCTCCCTCCCGACAAGCAATTCCTCGTCACCAGGAACG TGCCTTGCGTAAGACGEST: gi|88358049|gb|CI650785.1|CI650785
genomic: GAGGAAGCCGTATCTCCCTCCCGACAAGCAATTCCTCGTCACCAGGAACGgtatgctgat ... ctgctggcagTGCCTTGCGTAAGACG
EST: GAGGAAGCCGTATCTCCCTCCCGACAAGCAATTCCTCGTCACCAGGAACG TGCCTTGCGTAAGACGCGCTGTCTCACTTGAAGAAGAGTATGATGCAGCAGEST: gi|88468864|gb|CI696866.1|CI696866
genomic: GAGGAAGCCGTATCTCCCTCCCGACAAGCAATTCCTCGTCACCAGGAACGgtatgctgat ... ctgctggcagTGCCTTGCGTAAGACGCGCTGTCTCACTTGAAGAAGAGTATGATGCAGCAG
EST: GAGGAAGCCGTATCTCCCTCCCGACAAGCAATTCCTCGTCACCAGCAACG TGCCTTGCGTAAGACGCGCTGTCTCACTTGAAGAAGEST: gi|88381511|gb|CI682167.1|CI682167
genomic: GAGGAAGCCGTATCTCCCTCCCGACAAGCAATTCCTCGTCACCAGGAACGgtatgctgat ... ctgctggcagTGCCTTGCGTAAGACGCGCTGTCTCACTTGAAGAAG
EST: GAGGAAGCCGTATCTCCCTCCCGACAAGCAATTCCTCGTCACCAGGAACG TGCCTTGCGTAAGACGCGCTGTCTCACTTGAAGAAGAGTATGATGCAGCAGEST: gi|29684594|gb|CB680869.1|CB680869
genomic: GAGGAAGCCGTATCTCCCTCCCGACAAGCAATTCCTCGTCACCAGGAACGgtatgctgat ... ctgctggcagTGCCTTGCGTAAGACGCGCTGTCTCACTTGAAGAAGAGTATGATGCAGCAG
EST: GAGGAAGCCGTATCTCCCTCCCGACAAGCAATTCCTCGTCACCAGGAACG TGCCTTGCGTAAGACGCGCTGTCTCACTTGAAGAAGAGTATGATGCAGCAG
genomic: GAGGAAGCCGTATCTCCCTCCCGACAAGCAATTCCTCGTCACCAGGAACGgtatgctgat ... ctgctggcagTGCCTTGCGTAAGACGCGCTGTCTCACTTGAAGAAGAGTATGATGCAGCAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGAGGCGGGCGATCCGAGCAAGAGGAAGCCGTATCTCCCTCCCGACAAGCAATTCCTCGTCACCAGGAACGgtatgctgattctaaattggttctatttcatcttgtgctaggattcgatggaatgctgcattgggtgacatgattgttatgctagtttccactggtcttg
- - - - - - - - - - - - - - - - - - - - - - - AAGCAA