1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
AGTTGCCATCAAGAAGATTGGCAATGCATTCGACAACCATATCGATGCCAAGCGGACACTGAGAGAAATCAAGCTGCTTCGCCACATGGACCACGAGAATgtaagagctgtttgtttaaattggttttcgacattcctagtgattattgatcgaacttggccttaccactattaggtaatttattgggtgtgatttacat...
species | Oryza sativa |
transcript | LOC_Os10g38950.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: AGCGGACACTGAGAGAAATCAAGCTGCTTCGCCACATGGACCACGAGAAT ATTATTGCCATAAAGGACATAATTCGCCCCCCAAGAAGAGACAACTTTAATEST: gi|218479396|gb|FG953008.1|FG953008
genomic: AGCGGACACTGAGAGAAATCAAGCTGCTTCGCCACATGGACCACGAGAATgtaagagctg ... tggatcacagATTATTGCCATAAAGGACATAATTCGCCCCCCAAGAAGAGACAACTTTAAT
EST: CATGGACCACGAGAAT ATTATTGCCATAAAGGACATAATTCGCCCCCCAAGAAGAGACAACTTTAATEST: gi|66923796|gb|CX110644.1|CX110644
genomic: CATGGACCACGAGAATgtaagagctg ... tggatcacagATTATTGCCATAAAGGACATAATTCGCCCCCCAAGAAGAGACAACTTTAAT
EST: CTGCTTCGCCACATGGACCACGAGAAT ATTATTGCCATAAAGGACATAATTCGCCCCCCAAGAAGAGACAACTTTAATEST: gi|29614215|gb|CB619228.1|CB619228
genomic: CTGCTTCGCCACATGGACCACGAGAATgtaagagctg ... tggatcacagATTATTGCCATAAAGGACATAATTCGCCCCCCAAGAAGAGACAACTTTAAT
EST: AGCGGACACTGAGAGAAATCAAGCTGCTTCGCCACATGGACCACGAGAAT ATTATTGCCATAAAGGACATAATTCGCCCCCCAAGAAGAGACAACTTTAATEST: gi|58601767|gb|CK012295.1|CK012295
genomic: AGCGGACACTGAGAGAAATCAAGCTGCTTCGCCACATGGACCACGAGAATgtaagagctg ... tggatcacagATTATTGCCATAAAGGACATAATTCGCCCCCCAAGAAGAGACAACTTTAAT
EST: AGCGGACACTGAGAGAAATCAAGCTGCTTCGCCACATGGACCACGAGAAT ATTATTGCCATAAAGGACATAATTCGCCCCCCAAGAAGAGACAACTTTAATEST: gi|29614256|gb|CB619269.1|CB619269
genomic: AGCGGACACTGAGAGAAATCAAGCTGCTTCGCCACATGGACCACGAGAATgtaagagctg ... tggatcacagATTATTGCCATAAAGGACATAATTCGCCCCCCAAGAAGAGACAACTTTAAT
EST: AGCGGACACTGAGAGAAATCAAGCTGCTTCGCCACATGGACCACGAGAAT ATTATTGCCATAAAGGACATAATTCGCCCCCCAAGAAGAGACAACTTTAATEST: gi|33381800|gb|CF197143.1|CF197143
genomic: AGCGGACACTGAGAGAAATCAAGCTGCTTCGCCACATGGACCACGAGAATgtaagagctg ... tggatcacagATTATTGCCATAAAGGACATAATTCGCCCCCCAAGAAGAGACAACTTTAAT
EST: GCTGCTTCGCCACATGGACCACGAGAAT ATTATTGCCATAAAGGACATAATTCGCCCCCCAAGAAGAGACAACTTTAAT
genomic: GCTGCTTCGCCACATGGACCACGAGAATgtaagagctg ... tggatcacagATTATTGCCATAAAGGACATAATTCGCCCCCCAAGAAGAGACAACTTTAAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGTTGCCATCAAGAAGATTGGCAATGCATTCGACAACCATATCGATGCCAAGCGGACACTGAGAGAAATCAAGCTGCTTCGCCACATGGACCACGAGAATgtaagagctgtttgtttaaattggttttcgacattcctagtgattattgatcgaacttggccttaccactattaggtaatttattgggtgtgatttacat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA