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 5'  3'   		2  
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 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATCAGTTAAAATAAATGGCTGACGCAGAGGACATTCAGCCCCTTGTCTGTGACAATGGAACCGGAATGGTCAAGgtaataaaaagtgatgacttggcatcgcattgttgaacaaaatttctacctgatggtaattattgttacaattgagaagctcatcaagtattaactgttttcatttttcatag

Basic information

species Oryza sativa
transcript LOC_Os10g36650.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os10g36650.1 (Oryza sativa), 5'ss of exon 2
lower sequence: GRMZM2G030169_T02 (Zea mays), 5'ss of exon 2
-------ATCAGTTAAAATAAATGGCTGACGCAGAGGACATTCAGCCCCTTGTCTGTGACAATGGAACCGGAATGGTCAAGgtaataaaaagtgatgacttggcatcgcattgttgaacaaaatttctacctgatggtaattattgttacaattgagaagctcatcaagtattaactgttttcatttttcatag
       |||| |||| ||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||      ||  |  |||||||||  ||| |  ||  |   |||  | |  |    |    | ||| | ||          | ||| |    || ||| ||| | | ||||
ATTGCAGATCATTTAACATAAATGGCTGACGCAGAGGACATTCAGCCCCTAGTCTGTGACAATGGAACTGGAATGGTCAAGgtaact----gtagtcgcttggcatcatattctctaatga---ttcctctttttccatacagcttttagattttcagtcaatgttaagca----ctttttccatctcttatag

upper sequence: LOC_Os10g36650.1 (Oryza sativa), 5'ss of exon 2
lower sequence: GRMZM2G082484_T01 (Zea mays), 5'ss of exon 2
-------ATCAGTTAAAATAAATGGCTGACGCAGAGGACATTCAGCCCCTTGTCTGTGACAATGGAACCGGAATGGTCAAGgtaataaaaagtgatgacttggcatcgcattgttgaacaaaatttctacctgatggtaattattgttacaattgagaagctcatcaagtattaactgttttc-----atttttcatag
       |||| |||| ||||||||||||| ||||||||||||||||||| ||||||||||||||||| |||||||||||||||||     |||   ||||||| ||  ||| |    || | |   |   |   || |  | || |   |||| | |   |||     | || | | |||||     || | | ||||
ATTGCAGATCATTTAACATAAATGGCTGACTCAGAGGACATTCAGCCCCTAGTCTGTGACAATGGAACTGGAATGGTCAAGgtaatt----gtggccacttggcgtcatattctctg-cagattcctttttttcaggcagcttttat---aattta-attttcagtcgatgttcattattttccccccatctcttatag

upper sequence: LOC_Os10g36650.1 (Oryza sativa), 5'ss of exon 2
lower sequence: GRMZM2G030169_T03 (Zea mays), 5'ss of exon 1
--------------------------ATCAGTTAAAATAAATGGCTGACGCAGAGGACATTCAGCCCCTTGTCTGTGACAATGGAACCGGAATGGTCAAGgtaataaaaagtgatgacttggcatcgcattgttgaacaaaatttctacctgatggtaattattgttacaattgagaagctcatcaagtattaactgttttcatttttcatag
                          |||| |||| ||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||      ||  |  |||||||||  ||| |  ||  |   |||  | |  |    |    | ||| | ||          | ||| |    || ||| ||| | | ||||
ATTGTTTTCATTCATGCAGATTGCAGATCATTTAACATAAATGGCTGACGCAGAGGACATTCAGCCCCTAGTCTGTGACAATGGAACTGGAATGGTCAAGgtaact----gtagtcgcttggcatcatattctctaatga---ttcctctttttccatacagcttttagattttcagtcaatgttaagca----ctttttccatctcttatag

upper sequence: LOC_Os10g36650.1 (Oryza sativa), 5'ss of exon 2
lower sequence: GLYMA04G39380.2 (Glycine max), 5'ss of exon 2
--ATCAGTTAAAATAAATGGCTGACGCAGAGGACATTCAGCCCCTTGTCTGTGACAATGGAACCGGAATGGTCAAGgtaataaaaagtgatgacttggcatcgcattgttgaacaaaatttctacctgatggtaattattgttacaattgagaagctcat--caagtattaactgttttcatttttcatag
   |  | |||||   |||||||| || ||||| ||||| ||||||||||||||||||||||| |||||||| |||||  ||  |  |      ||  | ||    ||||      |||| | | ||  | ||  |   | |    ||  |     | ||  | |  || | |||| | ||          
TAGTTTGGTAAAA--GATGGCTGATGCTGAGGATATTCAACCCCTTGTCTGTGACAATGGAACTGGAATGGTGAAGgt--tagtactttgcagttt--cttc----tgttatgtgtaattgc-atctattagtc-tcggtttcgttatcaaacgatttatttctataatgatctgtgtacag---------

upper sequence: LOC_Os10g36650.1 (Oryza sativa), 5'ss of exon 2
lower sequence: GLYMA15G05570.1 (Glycine max), 5'ss of exon 2
ATCAGTTAAAATAAATGGCTGACGCAGAGGACATTCAGCCCCTTGTCTGTGACAATGGAACCGGAATGGTCAAGgtaataaaaagt----------gatgacttggcatcgcattgttgaacaaaatt-tctacctgatggtaa-ttattgtt-acaattgagaagctcatcaa-gtattaactgttttcatttttcatag
    |||  || | |||||||| || ||||||||||| || |||||   ||| |||||||| |||||||||||||| | || | ||          ||||| |     | |     ||||| || | | |  ||    || |   ||| | || |   || |  |    ||  |  |||  | | || ||  | ||   ||
----GTTTTAAAAGATGGCTGATGCTGAGGACATTCAACCTCTTGTTGTTGATAATGGAACTGGAATGGTCAAGgttagaagatgttttgccaattgatgagtgtttcttgtgccattgaagaagactgttcactctgtgcttgcttagtattcattgttaaatatgatattgatatatatatttttctcgatgtttgcag

upper sequence: LOC_Os10g36650.1 (Oryza sativa), 5'ss of exon 2
lower sequence: GLYMA05G32220.1 (Glycine max), 5'ss of exon 1
------------------------ATCAG--TTAAAATAAATGGCTGACGCAGAGGACATTCAGCCCCTTGTCTGTGACAATGGAACCGGAATGGTCAAGgtaataaaaagtgatgacttggcatcgcattgttgaacaaaatt-tctacctgatggtaattattgttacaattgagaagctcatca-agtattaactgttttcatttttcatag
                          |||  ||  || | ||||| || || ||||| ||||| |||||||| |||||||||||||| ||||||||||||||  ||  |  |   | ||| |  |    |||||  |     || |  | ||| | |   | | | | | || |||     | ||   | |||  |                   
TATTTCATGGCACCCTATGCTTTTTGCAGGTTTGTAAAAGATGGCCGATGCTGAGGATATTCAACCCCTTGTTTGTGACAATGGAACTGGAATGGTCAAGgt--tagtacttagcggctttgtttt---ttgtttcatgtgcttgtgcatctgctagccttgagt-tcataactgaatctttgattttaatatggaacag---------------

upper sequence: LOC_Os10g36650.1 (Oryza sativa), 5'ss of exon 2
lower sequence: GLYMA08G15480.1 (Glycine max), 5'ss of exon 2
ATCAGTTAAAATAAATGGCTGACGCAGAGGACATTCAGCCCCTTGTCTGTGACAATGGAACCGGAATGGTCAAGgtaataaaaagtgatgacttggcatcgcattgttgaacaaaatttctacctgatggtaattattgttacaattgagaagctcatca-agtattaactgttttcatttttcatag
     ||  || | ||||| || || ||||| ||||| |||||||| || ||||||||||| ||||||||||||||  ||  |  |  ||  ||    | |  |||||| |     | |  |  ||   ||  | | | | | || |||  |  | ||   | |||  |                   
---GTTTGTAAAAGATGGCAGATGCCGAGGATATTCAACCCCTTGTTTGCGACAATGGAACTGGAATGGTCAAGgt--tagtacttcgtggattt---ttgttttgttgca-----tgtgcatatgcaagtcttgagt-tcataagtgaataatttattttaatatggaacag---------------

upper sequence: LOC_Os10g36650.1 (Oryza sativa), 5'ss of exon 2
lower sequence: GLYMA04G39380.1 (Glycine max), 5'ss of exon 2
ATCAGTTAAAATAAATGGCTGACGCAGAGGACATTCAGCCCCTTGTCTGTGACAATGGAACCGGAATGGTCAAGgtaataaaaagtgatgacttggcatcgcattgttgaacaaaatttctacctgatggtaattattgttacaattgagaagctcat--caagtattaactgttttcatttttcatag
 |  | |||||   |||||||| || ||||| ||||| ||||||||||||||||||||||| |||||||| |||||  ||  |  |      ||  | ||    ||||      |||| | | ||  | ||  |   | |    ||  |     | ||  | |  || | |||| | ||          
-TTTGGTAAAA--GATGGCTGATGCTGAGGATATTCAACCCCTTGTCTGTGACAATGGAACTGGAATGGTGAAGgt--tagtactttgcagttt--cttc----tgttatgtgtaattgc-atctattagtc-tcggtttcgttatcaaacgatttatttctataatgatctgtgtacag---------

upper sequence: LOC_Os10g36650.1 (Oryza sativa), 5'ss of exon 2
lower sequence: GLYMA06G15520.2 (Glycine max), 5'ss of exon 2
ATCAGTTAAAATAAATGGCTGACGCAGAGGACATTCAGCCCCTTGTCTGTGACAATGGAACCGGAATGGTCAAGgt-aataaaaagtgatgacttggcatcgcattgttgaacaaaatttctacctgatggtaattattgttacaattgagaagctcatcaagtattaactgttttcatttttcatag
 |  | |||||  ||||||||| || ||||| ||||| |||||||| |||||||||||||| |||||||| ||||| | ||    |   |  ||||  |  |  |  ||| |   | |||   | || |  | ||||||| |  | ||    |  | ||||  | |  || |                
-TTTGGTAAAA--AATGGCTGATGCTGAGGATATTCAACCCCTTGTTTGTGACAATGGAACTGGAATGGTGAAGgttagtactttgcagtttcttgtta--gtgtaattgcatcta-tttagtcttggtt-tcattattgctcaatttatttaaatgatcatctgtgtacag----------------

upper sequence: LOC_Os10g36650.1 (Oryza sativa), 5'ss of exon 2
lower sequence: GLYMA05G32220.2 (Glycine max), 5'ss of exon 2
ATCAGTTAAAATAAATGGCTGACGCAGAGGACATTCAGCCCCTTGTCTGTGACAATGGAACCGGAATGGTCAAGgtaataaaaagtgatgacttggcatcgcattgttgaacaaaatt-tctacctgatggtaattattgttacaattgagaagctcatca-agtattaactgttttcatttttcatag
     ||  || | ||||| || || ||||| ||||| |||||||| |||||||||||||| ||||||||||||||  ||  |  |   | ||| |  |    |||||  |     || |  | ||| | |   | | | | | || |||     | ||   | |||  |                   
---GTTTGTAAAAGATGGCCGATGCTGAGGATATTCAACCCCTTGTTTGTGACAATGGAACTGGAATGGTCAAGgt--tagtacttagcggctttgtttt---ttgtttcatgtgcttgtgcatctgctagccttgagt-tcataactgaatctttgattttaatatggaacag---------------

upper sequence: LOC_Os10g36650.1 (Oryza sativa), 5'ss of exon 2
lower sequence: GLYMA08G19420.1 (Glycine max), 5'ss of exon 2
ATCAGTTAAAATAAATGGCTGACGCAGAGGACATTCAGCCCCTTGTCTGTGACAATGGAACCGGAATGGTCAAGgtaataaaaagtgatgacttggcatcgcattgttgaacaaaatttctacctgatggtaattattgt-tacaattgagaagctcatcaa-gtattaactgttttcatttttcatag
    |||  || |||||||||| || ||||||||||| || |||||   ||| |||||||| |||||||||||||| | || | ||  |  |        |  |  ||         ||  |   ||  ||      |||      || |  |    || ||  |||    | | | || | ||   ||
----GTTTTAAAAAATGGCTGATGCTGAGGACATTCAACCTCTTGTTGTTGATAATGGAACTGGAATGGTCAAGgttagaacatgttttttccaattgatgagtgcttcttgtgctattgaagtagacagttcgctctgtgcttgcttaaatatgatattaatatatattttttctccaatgtttgcag

upper sequence: LOC_Os10g36650.1 (Oryza sativa), 5'ss of exon 2
lower sequence: AT5G09810.1 (Arabidopsis thaliana), 5'ss of exon 2
ATCAGTTAAAATAAATGGCTGACGCAGAGGACATTCAGCCCCTTGTCTGTGACAATGGAACCGGAATGGTCAAGgtaataaaaagtgatgacttgg-catcgcattgttgaacaaaatttctacctgatggtaattattgttacaattgagaa-gctcatcaagtattaactgttttcatttttcatag
          | ||||||| || |  ||||| |||||||| |||||||||||||||||||| |||||||| ||||| |   | | || | | || |  |  | || |||   | ||  ||||   || ||   ||   |   || | |||  | | |  |    ||||||| |                
--------TGAAAAATGGCCGATGGTGAGGATATTCAGCCACTTGTCTGTGACAATGGAACTGGAATGGTGAAGgtgagttagactgtttatttagatactgtatggtt---ctaaccttct--ttgttgtacatgtgtaagactactgatcatgatttttgtatattaacag----------------

upper sequence: LOC_Os10g36650.1 (Oryza sativa), 5'ss of exon 2
lower sequence: Vv04s0044g00580.t01 (Vitis vinifera), 5'ss of exon 3
ATCAGTTA-AAATAAATGGCTGACGCAGAGGACATTCAGCCCCTTGTCTGTGACAATGGAACCGGAATGGTCAAGgtaataaaaagtgatgacttggcatcgcattgttgaacaaaatttctacctgatggtaattattgttacaattgagaagctcatcaagtattaactgttttcattttt-catag
    || | |||   ||||| ||  | || || || |||||||| ||||||||||||||||| |||||||| |||||         || ||  |     | || ||| |   || | ||  |   || || |   |  |  |  |||    ||  | |  |||  ||   |||| |  ||| |    ||
----GTAATAAAAGGATGGCCGATACTGAAGATATCCAGCCCCTCGTCTGTGACAATGGAACTGGAATGGTGAAGgtc--------tgttgtttctttcttgc-ttgatatgcagatttgttg--tgttgtttgctgctcctcaaatgctcaatttgaataagctttccatgttatgctttatatgcag

upper sequence: LOC_Os10g36650.1 (Oryza sativa), 5'ss of exon 2
lower sequence: Vv12s0178g00200.t01 (Vitis vinifera), 5'ss of exon 1
ATCAGTTAAAATAAATGGCTGACGCAGAGGACATTCAGCCCCTTGTCTGTGACAATGGAACCGGAATGGTCAAGgtaataaaaagtgatgacttggcatcgcattgttgaacaaaatttctacctgatggtaattattgttacaattgagaagctcatcaagtattaactgttttcatttttcatag
    |||  |  | ||||| || || ||||| || ||||| ||||| |||||||||||||| ||||||||||||||  |    ||| ||   |    ||  || ||       |  ||| |  |||    |  |||     |    |     | |  |  |  || || |    ||           
--AGGTTTTAGAAGATGGCCGATGCCGAGGATATCCAGCCTCTTGTGTGTGACAATGGAACTGGAATGGTCAAGgt--ttgtcagttattcttatttatttcaatgagttcatatgtttgtgtctgcacttgtttagataaagggctttagggattttacaaaatgaatttgactc-----------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|163929120|gb|EG710977.1|EG710977
EST:     CAGAGGACATTCAGCCCCTTGTCTGTGACAATGGAACCGGAATGGTCAAG                         GCTGGGTTTGCTGGAGATGATGCTCCCCGTGCTGTTTTCCCGAGTATTGTT
genomic: CAGAGGACATTCAGCCCCTTGTCTGTGACAATGGAACCGGAATGGTCAAGgtaataaaaa ... tttttcatagGCTGGGTTTGCTGGAGATGATGCTCCCCGTGCTGTTTTCCCGAGTATTGTT
EST: gi|88372609|gb|CI610932.1|CI610932
EST:     CAGAGGACATTCAGCCCCTTGTCTGTGACAATGGAA-CGGAATGGTCAAG                         GCTGGGTTTGCTGGAGATGATGCTCCCCGTGCTGTTTTCCCGAGTATTGTT
genomic: CAGAGGACATTCAGCCCCTTGTCTGTGACAATGGAACCGGAATGGTCAAGgtaataaaaa ... tttttcatagGCTGGGTTTGCTGGAGATGATGCTCCCCGTGCTGTTTTCCCGAGTATTGTT
EST: gi|88398388|gb|CI595789.1|CI595789
EST:     CAGAGGACATTCGGCCCCTTGTCTGTGACAATGGAACCGGAATGGTCAAG                         GCTGGGTTTGCTGGAGATGATGCTCCCCGTGCTGTTTTCCCGAGTATTGTT
genomic: CAGAGGACATTCAGCCCCTTGTCTGTGACAATGGAACCGGAATGGTCAAGgtaataaaaa ... tttttcatagGCTGGGTTTGCTGGAGATGATGCTCCCCGTGCTGTTTTCCCGAGTATTGTT
EST: gi|33675014|gb|CF303253.1|CF303253
EST:     CAGAGGACATTCAGCCCCTTGTCTGTGACAATGGAACCGGAATGGTCAAG                         GCTGGGTTTGCTGGAGATGATGCTCCCCGTGCTGTTTTCCCGAGTATTGTT
genomic: CAGAGGACATTCAGCCCCTTGTCTGTGACAATGGAACCGGAATGGTCAAGgtaataaaaa ... tttttcatagGCTGGGTTTGCTGGAGATGATGCTCCCCGTGCTGTTTTCCCGAGTATTGTT
EST: gi|163917736|gb|EG711282.1|EG711282
EST:     AGAGGACATTCAGCCCCTTGTCTGTGACAATGGAACCGGAATGGTCAAG                         GCTGGGTTTGCTGGAGATGATGCTCCCCGTGCTGTTTTCCCGAGTATTGTT
genomic: AGAGGACATTCAGCCCCTTGTCTGTGACAATGGAACCGGAATGGTCAAGgtaataaaaa ... tttttcatagGCTGGGTTTGCTGGAGATGATGCTCCCCGTGCTGTTTTCCCGAGTATTGTT
EST: gi|58682386|gb|CK071073.1|CK071073
EST:     CAGAGGACATTCAGCCCCTTGTCTGTGACAATGGAACCGGAATGGTCAAG                         GCTGGGTTTGCTGGAGATGATGCTCCCCGTGCTGTTTTCCCGAGTATTGTT
genomic: CAGAGGACATTCAGCCCCTTGTCTGTGACAATGGAACCGGAATGGTCAAGgtaataaaaa ... tttttcatagGCTGGGTTTGCTGGAGATGATGCTCCCCGTGCTGTTTTCCCGAGTATTGTT
EST: gi|88731298|gb|CI754911.1|CI754911
EST:     CAGAGGACATTCAGCCCCTTGTCTGTGACAATGGAACCGGAATGGTCAAG                         GCTGGGTTTGCTGGAGATGATGCTCCCCGTGCTGTTTTCCCGAGTATTGTT
genomic: CAGAGGACATTCAGCCCCTTGTCTGTGACAATGGAACCGGAATGGTCAAGgtaataaaaa ... tttttcatagGCTGGGTTTGCTGGAGATGATGCTCCCCGTGCTGTTTTCCCGAGTATTGTT
EST: gi|163918630|gb|EG710312.1|EG710312
EST:     CAGAGGACATTCAGCCCCTTGTCTGTGACAATGGAACCGGAATGGTCAAG                         GCTGGGTTTGCTGGAGATGATGCTCCCCGTGCTGTTTTCCCGAGTATTGTT
genomic: CAGAGGACATTCAGCCCCTTGTCTGTGACAATGGAACCGGAATGGTCAAGgtaataaaaa ... tttttcatagGCTGGGTTTGCTGGAGATGATGCTCCCCGTGCTGTTTTCCCGAGTATTGTT
EST: gi|88312614|gb|CI587522.1|CI587522
EST:     CAGAGGAAATTCAGCCCCTTGTCTGTGACAATGGAACCGGAATGGTCAAG                         GGTGGGTTTGGTGGAGATGATGCTCCCCGTGCTGTTTTCCCGAGTATTGTT
genomic: CAGAGGACATTCAGCCCCTTGTCTGTGACAATGGAACCGGAATGGTCAAGgtaataaaaa ... tttttcatagGCTGGGTTTGCTGGAGATGATGCTCCCCGTGCTGTTTTCCCGAGTATTGTT
EST: gi|58657068|gb|CK045748.1|CK045748
EST:     AGAGGACATTCAGCCCCTTGTCTGTGACAATGGAACCGGAATGGTCAACG                         GCTGGGTTTGCTGGAGATGATGCTCCCCGTGCTGTTTTCCCGAGTATTGT
genomic: AGAGGACATTCAGCCCCTTGTCTGTGACAATGGAACCGGAATGGTCAA-Ggtaataaaaa ... tttttcatagGCTGGGTTTGCTGGAGATGATGCTCCCCGTGCTGTTTTCCCGAGTATTGT
EST: gi|88326071|gb|CI651124.1|CI651124
EST:     CAGAGGACATTCAGCCCCTTGTCTGTGACAATGGAACCGGAATGGTCAAG                         GCTGGGTTTGCTGGAGATGATGCTCCCCGTGCTGTTTTCCCGAGTATTGTT
genomic: CAGAGGACATTCAGCCCCTTGTCTGTGACAATGGAACCGGAATGGTCAAGgtaataaaaa ... tttttcatagGCTGGGTTTGCTGGAGATGATGCTCCCCGTGCTGTTTTCCCGAGTATTGTT
EST: gi|88734146|gb|CI757654.1|CI757654
EST:     CAGAGGACATTCAGCCCCTTGTCTGTGACAATGGAACCGGAATGGTCAAG                         GCTGGGTTTGCTGGAGATGATGCTCCCCGTGCTGTTTTCCCGAGTATTGTT
genomic: CAGAGGACATTCAGCCCCTTGTCTGTGACAATGGAACCGGAATGGTCAAGgtaataaaaa ... tttttcatagGCTGGGTTTGCTGGAGATGATGCTCCCCGTGCTGTTTTCCCGAGTATTGTT
EST: gi|58678178|gb|CK066865.1|CK066865
EST:     CAGAGGACATTCAGCCCCTTGTCTGTGACAATGGAACCGGAATGGTCAAG                         GCTGGGTTTGCTGGAGATGATGCTCCCCGTGCTGTTTTCCCGAGTATTGTT
genomic: CAGAGGACATTCAGCCCCTTGTCTGTGACAATGGAACCGGAATGGTCAAGgtaataaaaa ... tttttcatagGCTGGGTTTGCTGGAGATGATGCTCCCCGTGCTGTTTTCCCGAGTATTGTT
EST: gi|163920040|gb|EG709834.1|EG709834
EST:     CAGAGGACATTCAGCCCCTTGTCTGTGACAATGGAACCGGAATGGTCAAG                         GCTGGGTTTGCTGGAGATGATGCTCCCCGTGCTGTTTTCCCGAGTATTGTT
genomic: CAGAGGACATTCAGCCCCTTGTCTGTGACAATGGAACCGGAATGGTCAAGgtaataaaaa ... tttttcatagGCTGGGTTTGCTGGAGATGATGCTCCCCGTGCTGTTTTCCCGAGTATTGTT
EST: gi|58677488|gb|CK066175.1|CK066175
EST:     CAGAGGACATTCAGCCCCTTGTCTGTGACAATGGAACCGGAATGGTCAAG                         GCTGGGTTTGCTGGAGATGATGCTCCCCGTGCTGTTTTCCCGAGTATTGTT
genomic: CAGAGGACATTCAGCCCCTTGTCTGTGACAATGGAACCGGAATGGTCAAGgtaataaaaa ... tttttcatagGCTGGGTTTGCTGGAGATGATGCTCCCCGTGCTGTTTTCCCGAGTATTGTT
EST: gi|58672834|gb|CK061520.1|CK061520
EST:     CAGAGGACATTCAGCCCCTTGTCTGTGACAATGGAACCGGAATGGTCAAG                         GCTGGGTTTGCTGGAGATGATGCTCCCCGTGCTGTTTTCCCGAGTATTGTT
genomic: CAGAGGACATTCAGCCCCTTGTCTGTGACAATGGAACCGGAATGGTCAAGgtaataaaaa ... tttttcatagGCTGGGTTTGCTGGAGATGATGCTCCCCGTGCTGTTTTCCCGAGTATTGTT
EST: gi|58596034|gb|CK006562.1|CK006562
EST:     CAGAGGACATTCAGCCCCTTGTCTGTGACAATGGAACCGGAATGGTCAAG                         GCTGGGTTTGCTGGAGATGATGCTCCCCGTGCTGTTTTCCCGAGTATTGTT
genomic: CAGAGGACATTCAGCCCCTTGTCTGTGACAATGGAACCGGAATGGTCAAGgtaataaaaa ... tttttcatagGCTGGGTTTGCTGGAGATGATGCTCCCCGTGCTGTTTTCCCGAGTATTGTT
EST: gi|58669052|gb|CK057738.1|CK057738
EST:     CAGAGGACATTCAGCCCCTTGTCTGTGACAATGGAACCGGAATGGTCAAG                         GCTGGGTTTGCTGGAGATGATGCTCCCCGTGCTGTTTTCCCGAGTATTGTT
genomic: CAGAGGACATTCAGCCCCTTGTCTGTGACAATGGAACCGGAATGGTCAAGgtaataaaaa ... tttttcatagGCTGGGTTTGCTGGAGATGATGCTCCCCGTGCTGTTTTCCCGAGTATTGTT
EST: gi|58675018|gb|CK063705.1|CK063705
EST:     CAGAGGACATTCAGCCCCTTGTCTGTGACAATGGAACCGGAATGGTCAAG                         GCTGGGTTTGCTGGAGATGATGCTCCCCGTGCTGTTTTCCCGAGTATTGTT
genomic: CAGAGGACATTCAGCCCCTTGTCTGTGACAATGGAACCGGAATGGTCAAGgtaataaaaa ... tttttcatagGCTGGGTTTGCTGGAGATGATGCTCCCCGTGCTGTTTTCCCGAGTATTGTT
EST: gi|58679576|gb|CK068263.1|CK068263
EST:     CAGAGGACATTCAGCCCCTTGTCTGTGACAATGGAACCGGAATGGTCAAG                         GCTGGGTTTGCTGGAGATGATGCTCCCCGTGCTGTTTTCCCGAGTATTGTT
genomic: CAGAGGACATTCAGCCCCTTGTCTGTGACAATGGAACCGGAATGGTCAAGgtaataaaaa ... tttttcatagGCTGGGTTTGCTGGAGATGATGCTCCCCGTGCTGTTTTCCCGAGTATTGTT
EST: gi|88345337|gb|CI655995.1|CI655995
EST:     CAGAGGACATTCAGCCCCTTGTCTGTGACAATGGAACCGGAATGGTCAAG                         GCTGGGTTTGCTGGAGATGATGCTCCCCGTGCTGTTTTCCCGAGTATTGTT
genomic: CAGAGGACATTCAGCCCCTTGTCTGTGACAATGGAACCGGAATGGTCAAGgtaataaaaa ... tttttcatagGCTGGGTTTGCTGGAGATGATGCTCCCCGTGCTGTTTTCCCGAGTATTGTT
EST: gi|58680564|gb|CK069251.1|CK069251
EST:     CAGAGGACATTCAGCCCCTTGTCTGTGACAATGGAACCGGAATGGTCAAG                         GCTGGGTTTGCTGGAGATGATGCTCCCCGTGCTGTTTTCCCGAGTATTGTT
genomic: CAGAGGACATTCAGCCCCTTGTCTGTGACAATGGAACCGGAATGGTCAAGgtaataaaaa ... tttttcatagGCTGGGTTTGCTGGAGATGATGCTCCCCGTGCTGTTTTCCCGAGTATTGTT
EST: gi|58602776|gb|CK013304.1|CK013304
EST:     CAGAGGACATTCAGCCCCTTGTCTGTGACAATGGAACCGGAATGGTCAAG                         GCTGGGTTTGCTGGAGATGATGCTCCCCGTGCGGTTTTCCCGAGTATTGTT
genomic: CAGAGGACATTCAGCCCCTTGTCTGTGACAATGGAACCGGAATGGTCAAGgtaataaaaa ... tttttcatagGCTGGGTTTGCTGGAGATGATGCTCCCCGTGCTGTTTTCCCGAGTATTGTT
EST: gi|58601806|gb|CK012334.1|CK012334
EST:     CAGAGGACATTCAGCCCCTTGTCTGTGACAATGGAACCGGAATGGTCAAG                         GCTGGGTTTGCTGGAGATGATGCTCCCCGTGCTGTTTTCCCGAGTATTGTT
genomic: CAGAGGACATTCAGCCCCTTGTCTGTGACAATGGAACCGGAATGGTCAAGgtaataaaaa ... tttttcatagGCTGGGTTTGCTGGAGATGATGCTCCCCGTGCTGTTTTCCCGAGTATTGTT
EST: gi|58686486|gb|CK075173.1|CK075173
EST:     TGTGACAATGGAACCGGAATGGTCAAGG                         GCTGGGTTTGCTGGAGATGATGCTCCCCGTGCTGTTTTCCCGAGTATTGT
genomic: TGTGACAATGGAACCGGAATGGTCAA-Ggtaataaaaa ... tttttcatagGCTGGGTTTGCTGGAGATGATGCTCCCCGTGCTGTTTTCCCGAGTATTGT
EST: gi|58674914|gb|CK063601.1|CK063601
EST:     CAGAGGACATTCAGCCCCTTGTCTGTGACAATGGAACCGGAATGGTCAAG                         GCTGGGTTTGCTGGAGATGATGCTCCCCGTGCTGTTTTCCCGAGTATTGTT
genomic: CAGAGGACATTCAGCCCCTTGTCTGTGACAATGGAACCGGAATGGTCAAGgtaataaaaa ... tttttcatagGCTGGGTTTGCTGGAGATGATGCTCCCCGTGCTGTTTTCCCGAGTATTGTT
EST: gi|88391793|gb|CI603312.1|CI603312
EST:     CAGAGGACATTCAGCCCCTTGTCTGTGACAATGGAACCGGAATGGTCAAG                         GCTGGGTTTGCTGGAGATGATGCTCCCCGTGCTGTTTTCCCGAGTATTGTT
genomic: CAGAGGACATTCAGCCCCTTGTCTGTGACAATGGAACCGGAATGGTCAAGgtaataaaaa ... tttttcatagGCTGGGTTTGCTGGAGATGATGCTCCCCGTGCTGTTTTCCCGAGTATTGTT
EST: gi|88326710|gb|CI658436.1|CI658436
EST:     CAGAGGACATTCAGCCCCTTGTCTGTGACAATGGAACCGGAATGGTCAAG                         GCTGGGTTTGCTGGAGATGATGCTCCCCGTGCTGTTTTCCCGAGTATTGTT
genomic: CAGAGGACATTCAGCCCCTTGTCTGTGACAATGGAACCGGAATGGTCAAGgtaataaaaa ... tttttcatagGCTGGGTTTGCTGGAGATGATGCTCCCCGTGCTGTTTTCCCGAGTATTGTT
EST: gi|88391189|gb|CI595443.1|CI595443
EST:     CAGAGGACATTCAGCCCCTTGTCTGTGACAATGGAACCGGAATGGTCAAG                         GCTGGGTTTGCTGGAGATGATGCTCCCCGTGCTGTTTTCCCGAGTATTGTT
genomic: CAGAGGACATTCAGCCCCTTGTCTGTGACAATGGAACCGGAATGGTCAAGgtaataaaaa ... tttttcatagGCTGGGTTTGCTGGAGATGATGCTCCCCGTGCTGTTTTCCCGAGTATTGTT
EST: gi|58603147|gb|CK013675.1|CK013675
EST:     CAGAGGACATTCAGCCCCTTGTCTGTGACAATGGAACCGGAATGGTCAAG                         GCTGGGTTTGCTGGAGATGATGCTCCCCGTGCTGTTTTCCCGAGTATTGTT
genomic: CAGAGGACATTCAGCCCCTTGTCTGTGACAATGGAACCGGAATGGTCAAGgtaataaaaa ... tttttcatagGCTGGGTTTGCTGGAGATGATGCTCCCCGTGCTGTTTTCCCGAGTATTGTT
EST: gi|88347723|gb|CI655076.1|CI655076
EST:     CAGAGGACATTCAGCCCCTTGTCTGTGACAATGGAACCGGAATGGTCAAG                         GCTGGGTTTGCTGGAGATGATGCTCCCCGTGCTGTTTTCCCGAGTATTGTT
genomic: CAGAGGACATTCAGCCCCTTGTCTGTGACAATGGAACCGGAATGGTCAAGgtaataaaaa ... tttttcatagGCTGGGTTTGCTGGAGATGATGCTCCCCGTGCTGTTTTCCCGAGTATTGTT
EST: gi|88717124|gb|CI740634.1|CI740634
EST:     CAGAGGACATTCAGCCCCTTGTCTGTGACAATGGAACCGGAATGGTCAAG                         GCTGGGTTTGCTGGAGATGATGCTCCCCGTGCTGTTTTCCCGAGTATTGTT
genomic: CAGAGGACATTCAGCCCCTTGTCTGTGACAATGGAACCGGAATGGTCAAGgtaataaaaa ... tttttcatagGCTGGGTTTGCTGGAGATGATGCTCCCCGTGCTGTTTTCCCGAGTATTGTT
EST: gi|58599106|gb|CK009634.1|CK009634
EST:     CAGAGGACATTCAGCCCCTTGTCTGTGACAATGGAACCGGAATGGTCAAG                         GCTGGGTTTGCTGGAGATGATGCTCCCCGTGCTGTTTTCCCGAGTATTGTT
genomic: CAGAGGACATTCAGCCCCTTGTCTGTGACAATGGAACCGGAATGGTCAAGgtaataaaaa ... tttttcatagGCTGGGTTTGCTGGAGATGATGCTCCCCGTGCTGTTTTCCCGAGTATTGTT
EST: gi|88731188|gb|CI754801.1|CI754801
EST:     CAGAGGACATTCAGCCCCTTGTCTGTGACAATGGAACCGGAATGGTCAAG                         GCTGGGTTTGCTGGAGATGATGCTCCCCGTGCTGTTTTCCCGAGTATTGTT
genomic: CAGAGGACATTCAGCCCCTTGTCTGTGACAATGGAACCGGAATGGTCAAGgtaataaaaa ... tttttcatagGCTGGGTTTGCTGGAGATGATGCTCCCCGTGCTGTTTTCCCGAGTATTGTT
EST: gi|58607424|gb|CK035457.1|CK035457
EST:     CAGAGGACATTCAGCCCCTGGTCTGTGACAATGGAACCGGAATGGTCAAG                         GCTGGGTTTGCTGGAGATGATGCTCCCCGTGCTGTTTTCCCGAGTATTGTT
genomic: CAGAGGACATTCAGCCCCTTGTCTGTGACAATGGAACCGGAATGGTCAAGgtaataaaaa ... tttttcatagGCTGGGTTTGCTGGAGATGATGCTCCCCGTGCTGTTTTCCCGAGTATTGTT
EST: gi|88387898|gb|CI587986.1|CI587986
EST:     CAGAGGACATTCAGCCCCTTGTTTGTGACAATGGAACCGGAATGGTCAAG                         GCCTGGGTTTGCTGGAGATGATGCTCCCCGTGCTGTTTTCCCGAGTATTGT
genomic: CAGAGGACATTCAGCCCCTTGTCTGTGACAATGGAACCGGAATGGTCAAGgtaataaaaa ... tttttcatagG-CTGGGTTTGCTGGAGATGATGCTCCCCGTGCTGTTTTCCCGAGTATTGT
EST: gi|88414829|gb|CI604187.1|CI604187
EST:     CAGAGGACATTCAGCCCCTTGTCTGTGACAATGGAACCGGAATGGTCAAG                         GCTGGGTTTGCTGGAGATGATGCTCCCCGTGCTGTTTTCCCGAGTATTGTT
genomic: CAGAGGACATTCAGCCCCTTGTCTGTGACAATGGAACCGGAATGGTCAAGgtaataaaaa ... tttttcatagGCTGGGTTTGCTGGAGATGATGCTCCCCGTGCTGTTTTCCCGAGTATTGTT
EST: gi|58670950|gb|CK059636.1|CK059636
EST:     CAGAGGACATTCAGCCCCTTGTCTGTGACAATGGAACCGGAATGGTCAAG                         GCTGGGTTTGCTGGAGATGATGCTCCCCGTGCTGTTTTCCCGAGTATTG
genomic: CAGAGGACATTCAGCCCCTTGTCTGTGACAATGGAACCGGAATGGTCAAGgtaataaaaa ... tttttcatagGCTGGGTTTGCTGGAGATGATGCTCCCCGTGCTGTTTTCCCGAGTATTG
EST: gi|58653040|gb|CK041720.1|CK041720
EST:     CAGAGGACATTCAGCCCCTTGTCTGTGACAATGGAACCGGAATGGTCAAG                         GCTGGGTTTGCTGGAGATGATGCTCCCCGTGCTGTTTTCCCGAGTATTGTT
genomic: CAGAGGACATTCAGCCCCTTGTCTGTGACAATGGAACCGGAATGGTCAAGgtaataaaaa ... tttttcatagGCTGGGTTTGCTGGAGATGATGCTCCCCGTGCTGTTTTCCCGAGTATTGTT
EST: gi|58600933|gb|CK011461.1|CK011461
EST:     CAGAGGACATTCAGCCCCTTGTCTGTGACAATGGAACCGGAATGGTCAAG                         GCTGGGTTTGCTGGAGATGATGCTCCCCGTGCTGTTTTCCCGAGTATTGTT
genomic: CAGAGGACATTCAGCCCCTTGTCTGTGACAATGGAACCGGAATGGTCAAGgtaataaaaa ... tttttcatagGCTGGGTTTGCTGGAGATGATGCTCCCCGTGCTGTTTTCCCGAGTATTGTT
EST: gi|58657611|gb|CK046291.1|CK046291
EST:     CAGAGGACATTCAGCCCCTTGTCTGTGACAATGGAACCGGAATGGTCAAG                         GCTGGGTTTGCTGGAGATGATGCTCCCCGTGCTGTTTTCCCGAGTATTGTT
genomic: CAGAGGACATTCAGCCCCTTGTCTGTGACAATGGAACCGGAATGGTCAAGgtaataaaaa ... tttttcatagGCTGGGTTTGCTGGAGATGATGCTCCCCGTGCTGTTTTCCCGAGTATTGTT
EST: gi|88376978|gb|CI597762.1|CI597762
EST:     CAGAGGACATTCAGCCCCTTGTCTGTGACAATGGAACCGGAATGGTCAAG                         GCTGGGTTTGCTGGAGATGATGCTCCCCGTGCTGTTTTCCCGAGTATTGTT
genomic: CAGAGGACATTCAGCCCCTTGTCTGTGACAATGGAACCGGAATGGTCAAGgtaataaaaa ... tttttcatagGCTGGGTTTGCTGGAGATGATGCTCCCCGTGCTGTTTTCCCGAGTATTGTT
EST: gi|286821|gb|D15628.1|D15628
EST:     CAGAGGACATTCAGCCCCTTGTCTGTGACAATGGAACCGGAATGGTCAAG                         GCTGGGTTTGCTGGAGATGATGCTCCCCGTGCTGTTTTCCCGAGTATTGTT
genomic: CAGAGGACATTCAGCCCCTTGTCTGTGACAATGGAACCGGAATGGTCAAGgtaataaaaa ... tttttcatagGCTGGGTTTGCTGGAGATGATGCTCCCCGTGCTGTTTTCCCGAGTATTGTT
EST: gi|58665180|gb|CK053866.1|CK053866
EST:     CAGAGGACATTCAGCCCCTTGTCTGTGACAATGGAACCGGAATGGTCAAG                         GCTGGGTTTGCTGGAGATGATGCTCCCCGTGCTGTTTTCCCGAGTATTGTT
genomic: CAGAGGACATTCAGCCCCTTGTCTGTGACAATGGAACCGGAATGGTCAAGgtaataaaaa ... tttttcatagGCTGGGTTTGCTGGAGATGATGCTCCCCGTGCTGTTTTCCCGAGTATTGTT
EST: gi|58664066|gb|CK052752.1|CK052752
EST:     CAGAGGACATTCAGCCCCTTGTCTGTGACAATGGAACCGGAATGGTCAAG                         GCTGGGTTTGCTGGAGATGATGCTCCCCGTGCTGTTTTCCCGAGTATTGTT
genomic: CAGAGGACATTCAGCCCCTTGTCTGTGACAATGGAACCGGAATGGTCAAGgtaataaaaa ... tttttcatagGCTGGGTTTGCTGGAGATGATGCTCCCCGTGCTGTTTTCCCGAGTATTGTT
EST: gi|701934|gb|D48225.1|D48225
EST:     CAGAGGACATTCAGCCCCTTGTCTGTGACAATGGAACCGGAATGGTCAAG                         GCTGGGTTTGCTGGAGATGATGCTCCCCGTGCTGTTTTCCCGAGTATTGTT
genomic: CAGAGGACATTCAGCCCCTTGTCTGTGACAATGGAACCGGAATGGTCAAGgtaataaaaa ... tttttcatagGCTGGGTTTGCTGGAGATGATGCTCCCCGTGCTGTTTTCCCGAGTATTGTT
EST: gi|88294500|gb|CI667474.1|CI667474
EST:     CAGAGGACATTCAGCCCCTTGTCTGTGACAATGGAACCGGAATGGTCAAG                         GCTGGGTTTGCTGGAGATGATGCTCCCCGTGCTGTTTTCCCGAGTATTGTT
genomic: CAGAGGACATTCAGCCCCTTGTCTGTGACAATGGAACCGGAATGGTCAAGgtaataaaaa ... tttttcatagGCTGGGTTTGCTGGAGATGATGCTCCCCGTGCTGTTTTCCCGAGTATTGTT
EST: gi|88298838|gb|CI566035.1|CI566035
EST:     CAGAGGACATTCAGCCCCTTGTCTGTGACAATGGAACCGGAATGGTCAAG                         GCTGGGTTTGCTGGAGATGATGCTCCCCGTGCTGTTTTCCCGAGTATTGTT
genomic: CAGAGGACATTCAGCCCCTTGTCTGTGACAATGGAACCGGAATGGTCAAGgtaataaaaa ... tttttcatagGCTGGGTTTGCTGGAGATGATGCTCCCCGTGCTGTTTTCCCGAGTATTGTT
EST: gi|88357708|gb|CI624959.1|CI624959
EST:     CAGAGGACATTCAGCCCCTTGTCTGTGACAATGGAACCGGAATGGTCAAG                         GCTGGGTTTGCTGGAGATGATGCTCCCCGTGCTGTTTTCCCGAGTATTGTT
genomic: CAGAGGACATTCAGCCCCTTGTCTGTGACAATGGAACCGGAATGGTCAAGgtaataaaaa ... tttttcatagGCTGGGTTTGCTGGAGATGATGCTCCCCGTGCTGTTTTCCCGAGTATTGTT
EST: gi|88398191|gb|CI588079.1|CI588079
EST:     CAGAGGACATTCAGCCCCTTGTCTGTGACAATGGAACCGGAATGGTCAAG                         GCTGGGTTTGCTGGAGATGATGCTCCCCGTGCTGTTTTCCCGAGTATTGTT
genomic: CAGAGGACATTCAGCCCCTTGTCTGTGACAATGGAACCGGAATGGTCAAGgtaataaaaa ... tttttcatagGCTGGGTTTGCTGGAGATGATGCTCCCCGTGCTGTTTTCCCGAGTATTGTT
EST: gi|58678348|gb|CK067035.1|CK067035
EST:     CAGA-GACATTCAGCCCCTTGTCTGTGACAATGGAACCGGAATGGTCAAG                         G-TGGGTTTGCTGGAGATGATGCTCCCCGTGCTGTTTTCCCGAGTATTGTT
genomic: CAGAGGACATTCAGCCCCTTGTCTGTGACAATGGAACCGGAATGGTCAAGgtaataaaaa ... tttttcatagGCTGGGTTTGCTGGAGATGATGCTCCCCGTGCTGTTTTCCCGAGTATTGTT
EST: gi|88419307|gb|CI599140.1|CI599140
EST:     CAGAGGACATTCAGCCCCTTGTCTGTGACAATGGAACCGGAATGGTCAAG                         GCTGGGTTTGCTGGAGATGATGCTCCCCGTGCTGTTTTCCCGAGTATTGTT
genomic: CAGAGGACATTCAGCCCCTTGTCTGTGACAATGGAACCGGAATGGTCAAGgtaataaaaa ... tttttcatagGCTGGGTTTGCTGGAGATGATGCTCCCCGTGCTGTTTTCCCGAGTATTGTT
EST: gi|58656556|gb|CK045236.1|CK045236
EST:     CAGAGGACATTCAGCCCCTTGTCTGTGACAATGGAACCGGAATGGTCAAT                         GCTGGGTTTGCTGGAGATGATGCTCCCCGTGCTGTTTTCCCGAGTATTGTT
genomic: CAGAGGACATTCAGCCCCTTGTCTGTGACAATGGAACCGGAATGGTCAAGgtaataaaaa ... tttttcatagGCTGGGTTTGCTGGAGATGATGCTCCCCGTGCTGTTTTCCCGAGTATTGTT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 72 (upstream exon), 72 (downstream exon)
Score: 37

ATCAGTTAAAATAAATGGCTGACGCAGAGGACATTCAGCCCCTTGTCTGTGACAATGGAACCGGAATGGTCAAGgtaataaaaa ... tttttcatagGCTGGGTTTGCTGGAGATGATGCTCCCCGTGCTGTTTTCCCGAGTATTGTTGGCCGTCCGCGACATACAGGCGTTATGGTTGGGATGGGACAAAAAGATG




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Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ATCAGTTAAAATAAATGGCTGACGCAGAGGACATTCAGCCCCTTGTCTGTGACAATGGAACCGGAATGGTCAAGgtaataaaaagtgatgacttggcatcgcattgttgaacaaaatttctacctgatggtaattattgttacaattgagaagctcatcaagtattaactgttttcatttttcatag

- - - - - - - - - - - -  AGAGGA