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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGTGCCCAGGGAGCTCCGCCTCGTGGAGGCCTTCGGCTACACCCTCGGCGGCATGTTCCTCGCCCGCTACGACGACAGCCCCGCCGGCAAGTTCGACGAGgtctcgtctcgccttctccttctccggcgatctgtccctctctcgctccgttaatttcttgatcggatttctcgctgtctctccttgcag

Basic information

species Oryza sativa
transcript LOC_Os10g35644.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os10g35644.3 (Oryza sativa), 5'ss of exon 2
lower sequence: GRMZM5G822098_T03 (Zea mays), 5'ss of exon 2
CGTGCCCAGGGAGCTCCGCCTCGTGGAGGCCTTCGGCTACACCCTCGGCGGCATGTTCCTCGCCCGCTACGACGACAGCCCCGCCGGCAAGTTCGACGAGgtct--cgtct-cgc---cttctccttctccggcgatctgtccctctctcg--ctccgt-taatttcttgatcggattt--ctcgctgtctctccttgcag----------------------------------
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CGTGCCGCGGGACCTCCGCCTGGTTGAGGCCTTCGGCTACACGCTCGGCGGCATGTTCCTGGCGCGCTACCACGACAGCCCTGCCGGCGAATTCGACGAGgtatactgcctgcgcgcaccgcgcctgccgccgccattggctgctgctgcgggttctatctaatgttcctgcaagattcggttcgacgacccggccgacccaccgaccgacaccctttttttttggcgcctgcag