1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
TGTAGAACCAAAGTGGGAAGACCCAGAGTGTGCAAATGGGGGCAAATGGACTGTGCCATGTAGCAGGAAGACCACCCTTGAGAACATGTGGCTTGAAACGgtacatttcctctaaaatcattgcttagtttggtcggaggctctgaagtgctttggatataacatctgttgcttgacctatcttctaaagtttctatcatttctgctgacaaacttttcgaacatgcag
species | Oryza sativa |
transcript | LOC_Os10g32970.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: ATGTAGCAGGAAGACCACCCTTGAGAACATGTGGCTTGAAACG CTGATGGCTCTGATTGGAGAGCAGTTTGATGAAAGTGAGGAAATTTGTGGAEST: gi|8860119|gb|AU097437.1|AU097437
genomic: ATGTAGCAGGAAGACCACCCTTGAGAACATGTGGCTTGAAACGgtacatttcc ... gaacatgcagCTGATGGCTCTGATTGGAGAGCAGTTTGATGAAAGTGAGGAAATTTGTGGA
EST: CAGGAAGACCACCCCTTGAGAACATGTGGCTTGAAACG CTGATGGCTCTGATTGGAGAGCAGTTTGATGAAAGTGAGGAAATTTGTGGAEST: gi|89165097|gb|CI255154.1|CI255154
genomic: CAGGAAGACCA-CCCTTGAGAACATGTGGCTTGAAACGgtacatttcc ... gaacatgcagCTGATGGCTCTGATTGGAGAGCAGTTTGATGAAAGTGAGGAAATTTGTGGA
EST: CTGTGCCATGTAGCAGGAAGACCACCCTTGAGAACATGTGGCTTGAAACG CTGATGGCTCTGATTGGAGAGCAGTTTGATGAAAGTGAGGAAATTTGTGGAEST: gi|86525895|gb|CI166101.1|CI166101
genomic: CTGTGCCATGTAGCAGGAAGACCACCCTTGAGAACATGTGGCTTGAAACGgtacatttcc ... gaacatgcagCTGATGGCTCTGATTGGAGAGCAGTTTGATGAAAGTGAGGAAATTTGTGGA
EST: CTGTGCCATGTAGCAGGAAGACCACCCTTGAGAACATGTGGCCTGAAACG CTGATGGCTCTGATTGGAGAGCAGTTTGATGAAAGTGAGGAAATTTGTGGAEST: gi|218493197|gb|FG958056.1|FG958056
genomic: CTGTGCCATGTAGCAGGAAGACCACCCTTGAGAACATGTGGCTTGAAACGgtacatttcc ... gaacatgcagCTGATGGCTCTGATTGGAGAGCAGTTTGATGAAAGTGAGGAAATTTGTGGA
EST: CTGTGCCATGTAGCAGGAAGACCACCCTTGAGAACATGTGGCTTGAAACG CTGATGGCTCTGATTGGAGAGCAGTTTGATGAAAGTGAGGAAATTTGTGGAEST: gi|89161806|gb|CI102154.1|CI102154
genomic: CTGTGCCATGTAGCAGGAAGACCACCCTTGAGAACATGTGGCTTGAAACGgtacatttcc ... gaacatgcagCTGATGGCTCTGATTGGAGAGCAGTTTGATGAAAGTGAGGAAATTTGTGGA
EST: CTGTGCCATGTAGCAGGAAGACCACCCTTGAGAACATGTGGCTTGAAACG CTGATGGCTCTGATTGGAGAGCAGTTTGATGAAAGTGAGGAAATTTGTGGAEST: gi|218485786|gb|FG945172.1|FG945172
genomic: CTGTGCCATGTAGCAGGAAGACCACCCTTGAGAACATGTGGCTTGAAACGgtacatttcc ... gaacatgcagCTGATGGCTCTGATTGGAGAGCAGTTTGATGAAAGTGAGGAAATTTGTGGA
EST: CTGTGCCATGTAGCAGGAAGACCACCCTTGAGAACATGTGGCTTGAAACG TTGATGGCTCTGATTGGAGAGCAGTTTGATGAAAGTGAGGAAATTTGTGGAEST: gi|86501861|gb|CI144494.1|CI144494
genomic: CTGTGCCATGTAGCAGGAAGACCACCCTTGAGAACATGTGGCTTGAAACGgtacatttcc ... gaacatgcagCTGATGGCTCTGATTGGAGAGCAGTTTGATGAAAGTGAGGAAATTTGTGGA
EST: CTGTGCCATGTAGCAGGAAGACCACCCTTGAGAACATGTGGCTTGAAACG CTGATGGCTCTGATTGGAGAGCAGTTTGATGAAAGTGAGGAAATTTGTGGAEST: gi|27576343|gb|CA999037.1|CA999037
genomic: CTGTGCCATGTAGCAGGAAGACCACCCTTGAGAACATGTGGCTTGAAACGgtacatttcc ... gaacatgcagCTGATGGCTCTGATTGGAGAGCAGTTTGATGAAAGTGAGGAAATTTGTGGA
EST: CTGTGCCATGTAGCAGGAAGACCACCCTTGAGAACATGTGGCTTGAAACG CTGATGGCTCTGATTGGAGAGCAGTTTGATGAAAGTGAGGAAATTTGTGGAEST: gi|29665281|gb|CB661556.1|CB661556
genomic: CTGTGCCATGTAGCAGGAAGACCACCCTTGAGAACATGTGGCTTGAAACGgtacatttcc ... gaacatgcagCTGATGGCTCTGATTGGAGAGCAGTTTGATGAAAGTGAGGAAATTTGTGGA
EST: CTGTGCCATGTAGCAGGAAGACCACCCTTGAGAACATGTGGCTTGAAACG CTGATGGCTCTGATTGGAGAGCAGTTTGATGAAAGTGAGGAAATTTGTGGAEST: gi|218483813|gb|FG965939.1|FG965939
genomic: CTGTGCCATGTAGCAGGAAGACCACCCTTGAGAACATGTGGCTTGAAACGgtacatttcc ... gaacatgcagCTGATGGCTCTGATTGGAGAGCAGTTTGATGAAAGTGAGGAAATTTGTGGA
EST: TGTGCCATGTTGCAGGTAGACCACCCTTGTAGAACATGTGGCTTGTAACG CTGATGGCTCTGATTGGAGAGCAGTTTGATGAAAGTGAGGAAATTTGTGGAEST: gi|86507489|gb|CI150122.1|CI150122
genomic: TGTGCCATGTAGCAGGAAGACCACCCTTG-AGAACATGTGGCTTGAAACGgtacatttcc ... gaacatgcagCTGATGGCTCTGATTGGAGAGCAGTTTGATGAAAGTGAGGAAATTTGTGGA
EST: AGAACATGTGGCTTGAAACG CTGATGGCTCTGATTGAAGAGCAGTTTGATGAAAGTGAGGAAATTTGTGGA
genomic: AGAACATGTGGCTTGAAACGgtacatttcc ... gaacatgcagCTGATGGCTCTGATTGGAGAGCAGTTTGATGAAAGTGAGGAAATTTGTGGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGTAGAACCAAAGTGGGAAGACCCAGAGTGTGCAAATGGGGGCAAATGGACTGTGCCATGTAGCAGGAAGACCACCCTTGAGAACATGTGGCTTGAAACGgtacatttcctctaaaatcattgcttagtttggtcggaggctctgaagtgctttggatataacatctgttgcttgacctatcttctaaagtttctatcatttctgctgacaaacttttcgaacatgcag
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