1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
GAGTGGATTTTAAGATCAAGTTCCTTACGATTGGTGGAAAGAAATTGAAGCTGACAATATGGGATACTGgtgagttcataacttgggttgtatagaaatggcctgcttttcgatgatatttagcttcagatgtgaatatacaatgtttggaaagcctttctgcgcttta...
species | Oryza sativa |
transcript | LOC_Os10g31830.2 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: GTTCCTTACGATTGGTGGAAAGAAATTGAAGCTGACAATATGGGATAGTG CTGGCCAGGAGEST: gi|58675259|gb|CK063946.1|CK063946
genomic: GTTCCTTACGATTGGTGGAAAGAAATTGAAGCTGACAATATGGGATACTGgtgagttcat ... tgtgttgcagCTGGCCAGGAG
EST: GTTCCTTACGATTGGTGGAAAGAAATTGAAGCTGACAATATGGGATACTG CTGGCCAGGAGAGGTTTAGGACAATTACTAGTTCTTACTACAGAGGTGCTC
genomic: GTTCCTTACGATTGGTGGAAAGAAATTGAAGCTGACAATATGGGATACTGgtgagttcat ... tgtgttgcagCTGGCCAGGAGAGGTTTAGGACAATTACTAGTTCTTACTACAGAGGTGCTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAGTGGATTTTAAGATCAAGTTCCTTACGATTGGTGGAAAGAAATTGAAGCTGACAATATGGGATACTGgtgagttcataacttgggttgtatagaaatggcctgcttttcgatgatatttagcttcagatgtgaatatacaatgtttggaaagcctttctgcgcttta
- - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - AGCTGA