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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAACATTGTTTCGACAGTAAATCTGGACTGCAGGTTGGATCTGAAAAAAATCGCTCTACAGGCTCGTAATGCAGAGTACAACCCAAAGgtatagcttcagcttctgatgctttctattcagtttctttcaggaacaaaacacggaattacatgtcatgtctataatctaactgtatcatttgtgtcatgtctataatctaactgtatcatttgtgctcggacag

Basic information

species Oryza sativa
transcript LOC_Os10g29660.2
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os10g29660.2 (Oryza sativa), 5'ss of exon 2
lower sequence: GLYMA16G25450.3 (Glycine max), 5'ss of exon 3
GAACATTGTTTCGACAGTAAATCTGGACTGCAGGTTGGATCTGAAAAAAATCGCTCTACAGGCTCGTAATGCAGAGTACAACCCAAAGgtatagcttcagcttctgatgctttctattcagtttctttcaggaacaaaacacggaattacatgtcatgtctataatctaactgtatcatttgtgtcatgtctataatctaactgtatcatttgtgctcggacag
 || ||||| || ||||| ||| ||||||| | |||||| || |||| ||| || || || |||||||||||||||||||| || |||| | || ||||   | ||    ||| || | | ||||  |||   |    |  | | |  |     ||||| || |   |   | |    ||||  ||     || |||                           
AAATATTGTGTCCACAGTCAATTTGGACTGTAAGTTGGACCTCAAAACAATTGCACTTCAAGCTCGTAATGCAGAGTACAATCCCAAGgca-agtttca---tttg----tttgtagtgaatttcactcaaatatgctat-ctgcacaatggtgcatgtttacatgtttctttttgtttttgcatctgaattacaat---------------------------