1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
AAAAGATTATGGGAGGTGCATAGCAGAAAAGGTCCCTGAGATTGAACAAAATATGTGTGCTAAGGAGTTTCTAGCACTCAGATCATGCATGCAGACTGTGgtaatttttttgtcattaagcaaacagggtgatcccataaaatcatgctattacatccatatacttaagtaaccaatttaattaaatgcaaagggccaaa...
species | Oryza sativa |
transcript | LOC_Os10g26140.2 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: ATATGTGTGCTAAGGAGTTTCTAGCACTCAGATCATGCATGCAGACTGTG GTCAAGCGCAAGGCTTGAAGTTCTGGAGTTAAAGCTTTCGGAATTTGATATEST: gi|88426630|gb|CI579459.1|CI579459
genomic: ATATGTGTGCTAAGGAGTTTCTAGCACTCAGATCATGCATGCAGACTGTGgtaatttttt ... atcctgaaagGTCAAGCGCAAGGCTTGAAGTTCTGGAGTTAAAGCTTTCGGAATTTGATAT
EST: ATATGTGTGCTAAGGAGTTTCTAGCACTCAGATCATGCATGCAGACTGTG GTCAAGCGCAAGGCTTGAAGTTCTGGAGTTAAAGCTTTCGEST: gi|88449558|gb|CI579838.1|CI579838
genomic: ATATGTGTGCTAAGGAGTTTCTAGCACTCAGATCATGCATGCAGACTGTGgtaatttttt ... atcctgaaagGTCAAGCGCAAGGCTTGAAGTTCTGGAGTTAAAGCTTTCG
EST: ATATGTGTGCTAAGGAGTTTCTAGCACTCAGATCATGCATGGAGACTGTG GTCAAGCGCAAGGCTTGAAGTEST: gi|88407793|gb|CI607927.1|CI607927
genomic: ATATGTGTGCTAAGGAGTTTCTAGCACTCAGATCATGCATGCAGACTGTGgtaatttttt ... atcctgaaagGTCAAGCGCAAGGCTTGAAGT
EST: ATATGTGTGCTAAGGAGTTTCTAGCACTCAGATCATGCATGCAGACTGTG GTCAAGCGCAAGGCTTGAAGTTCTGGAGTTAAAGCTTTCEST: gi|117245650|gb|CT848471.1|CT848471
genomic: ATATGTGTGCTAAGGAGTTTCTAGCACTCAGATCATGCATGCAGACTGTGgtaatttttt ... atcctgaaagGTCAAGCGCAAGGCTTGAAGTTCTGGAGTTAAAGCTTTC
EST: ATATGTGTGCTAAGGAGTTTCTAGCACTCAGATCATGCATGCAGACTGTG GTCAAGCGCAAGGCTTGAAGTTCTGGAGTTAAAGCTTTCGGAATTTGATATEST: gi|29634116|gb|CB639125.1|CB639125
genomic: ATATGTGTGCTAAGGAGTTTCTAGCACTCAGATCATGCATGCAGACTGTGgtaatttttt ... atcctgaaagGTCAAGCGCAAGGCTTGAAGTTCTGGAGTTAAAGCTTTCGGAATTTGATAT
EST: ATATGTGTGCTAAGGAGTTTCTAGCACTCAGATCATGCATGCAGACTGTG GTCAAGCGCAAGGCTTGAAGTTCTGGAGTTAAAGCTTTCGGAATTTGATATEST: gi|88390435|gb|CI607471.1|CI607471
genomic: ATATGTGTGCTAAGGAGTTTCTAGCACTCAGATCATGCATGCAGACTGTGgtaatttttt ... atcctgaaagGTCAAGCGCAAGGCTTGAAGTTCTGGAGTTAAAGCTTTCGGAATTTGATAT
EST: TATGTGTGCTAAGGAGTTTCTAGCACTCAGATCATGCATGCCAGACTGTG GTCAAGCGCAAGGCTTGAAGTTCTGGAGTTAAAGCCTTTCGGAATTTGATEST: gi|29630281|gb|CB635290.1|CB635290
genomic: TATGTGTGCTAAGGAGTTTCTAGCACTCAGATCATGCATGC-AGACTGTGgtaatttttt ... atcctgaaagGTCAAGCGCAAGGCTTGAAGTTCTGGAGTTAAAGC-TTTCGGAATTTGAT
EST: ATATGTGTGCTAAGGAGTTTCTAGCACTCAGATCATGCATGCAGACTGTG GTCAAGCGCAAGGCTTGAAGTTCTGGAGTTAAAGCTTTCGGAATTTGATAT
genomic: ATATGTGTGCTAAGGAGTTTCTAGCACTCAGATCATGCATGCAGACTGTGgtaatttttt ... atcctgaaagGTCAAGCGCAAGGCTTGAAGTTCTGGAGTTAAAGCTTTCGGAATTTGATAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAAAGATTATGGGAGGTGCATAGCAGAAAAGGTCCCTGAGATTGAACAAAATATGTGTGCTAAGGAGTTTCTAGCACTCAGATCATGCATGCAGACTGTGgtaatttttttgtcattaagcaaacagggtgatcccataaaatcatgctattacatccatatacttaagtaaccaatttaattaaatgcaaagggccaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA