1 5' 3' | 2 5' 3' | 3 5' 3' |
TTTTGCATTCAACAGCAGTAAGCTTTGGGACGCCAAGAACAGAGGTCATCAGGCCTGGAATTACATCCGGCAGCTCGACACGGCAAAGGAGGGGTTTCAAgtaagctagctagtatacttctttttcctactactccttagagcaagttcaatagtatagccaactactagctccaattcatctatagccaatctaatag...
species | Oryza sativa |
transcript | LOC_Os10g13810.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: GCCTGGAATTACATCCGGCAGCTCGACACGGCAAAGGAGGGGTTTCAA GAGACGGCATTTATAGAGCAGCTTGTAGAAGATGAAACTCATATGGAGGGCEST: gi|88231390|gb|CI231239.1|CI231239
genomic: GCCTGGAATTACATCCGGCAGCTCGACACGGCAAAGGAGGGGTTTCAAgtaagctagc ... atccttacagGAGACGGCATTTATAGAGCAGCTTGTAGAAGATGAAACTCATATGGAGGGC
EST: CTCGACACGGCAAAGGAGGGGTTTCAA GAGACGGCATTTATAGAGCAGCTTGTAGAAGATGAAACTCATATGGAGGGCEST: gi|33680230|gb|CF308469.1|CF308469
genomic: CTCGACACGGCAAAGGAGGGGTTTCAAgtaagctagc ... atccttacagGAGACGGCATTTATAGAGCAGCTTGTAGAAGATGAAACTCATATGGAGGGC
EST: AGGCCTGGAATTACATCCGGCAGCTCGACACGGCAAAGGAGGGGTTTCAA GAGACGGCATTTATAGAGCAGCTTGTAGAAGATGAAACTCATATGGAGGGCEST: gi|66920560|gb|CX107408.1|CX107408
genomic: AGGCCTGGAATTACATCCGGCAGCTCGACACGGCAAAGGAGGGGTTTCAAgtaagctagc ... atccttacagGAGACGGCATTTATAGAGCAGCTTGTAGAAGATGAAACTCATATGGAGGGC
EST: AGGCCTGGAATTACATCCGGCAGCTCGACACGGCAAAGGAGGGGTTTCAA GAGACGGCATTTATAGAGCAGCTTGTAGAAGATGAAACTCATATGGAGGGC
genomic: AGGCCTGGAATTACATCCGGCAGCTCGACACGGCAAAGGAGGGGTTTCAAgtaagctagc ... atccttacagGAGACGGCATTTATAGAGCAGCTTGTAGAAGATGAAACTCATATGGAGGGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTTTGCATTCAACAGCAGTAAGCTTTGGGACGCCAAGAACAGAGGTCATCAGGCCTGGAATTACATCCGGCAGCTCGACACGGCAAAGGAGGGGTTTCAAgtaagctagctagtatacttctttttcctactactccttagagcaagttcaatagtatagccaactactagctccaattcatctatagccaatctaatag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG