1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
ATTGAAAGACTCTGTGGATCTATTGGAAAGCATGGAGCAAAAGGGATTGCTTGATATGAATAAGgttgttacctgttctaatagtcctttttttagtgtatatcttcttctctttcctgatttccatctactttcag
species | Oryza sativa |
transcript | LOC_Os10g10170.2 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: TGGATCTATTGGAAAGCATGGAGCAAAAGGGATTGCTTGATATGAATAAG ATCCACCATGCTAGCTTTCTGAATGCCTGTAAGAAGCAAAGGGCTGTTCCGEST: gi|29671044|gb|CB667319.1|CB667319
genomic: TGGATCTATTGGAAAGCATGGAGCAAAAGGGATTGCTTGATATGAATAAGgttgttacct ... ctactttcagATCCACCATGCTAGCTTTCTGAATGCCTGTAAGAAGCAAAGGGCTGTTCCG
EST: TGCATCTATTGGAAAGCATGGAGCAAAAGGGATTGCTTGATATGAATAAG ATCCACCATGCTAGCTTTCTGAATGCCTGTAAGAAGCAAAGGGCTGTTCCGEST: gi|29614515|gb|CB619528.1|CB619528
genomic: TGGATCTATTGGAAAGCATGGAGCAAAAGGGATTGCTTGATATGAATAAGgttgttacct ... ctactttcagATCCACCATGCTAGCTTTCTGAATGCCTGTAAGAAGCAAAGGGCTGTTCCG
EST: TGGATCTATTGGAAAGCATGGAGCAAAAGGGATTGCTTGATATGAATAAG ATCCACCATGCTAGCTTTCTGAATGCCTGTAAGAAGCAAAGGGCTGTTCCGEST: gi|38481669|gb|CF965758.1|CF965758
genomic: TGGATCTATTGGAAAGCATGGAGCAAAAGGGATTGCTTGATATGAATAAGgttgttacct ... ctactttcagATCCACCATGCTAGCTTTCTGAATGCCTGTAAGAAGCAAAGGGCTGTTCCG
EST: TGGATCTATTGGAAAGCATGGAGCAAAAGGGATTGCTTGATATGAATAAG ATCCACCATGCTAGGGTTCTGAATGCCTGTAAGAAGCAAAGGGCTGTTCCGEST: gi|88723670|gb|CI747180.1|CI747180
genomic: TGGATCTATTGGAAAGCATGGAGCAAAAGGGATTGCTTGATATGAATAAGgttgttacct ... ctactttcagATCCACCATGCTAGCTTTCTGAATGCCTGTAAGAAGCAAAGGGCTGTTCCG
EST: TGGATCTATTGGAAAGCATGGAGCAAAAGGGATTGCTTGATATGAATAAG ATCCACCATGCTAGCTTTCTGAATGCCTGTAAGAAGCAAAGGGCTGTTCCGEST: gi|88716823|gb|CI740333.1|CI740333
genomic: TGGATCTATTGGAAAGCATGGAGCAAAAGGGATTGCTTGATATGAATAAGgttgttacct ... ctactttcagATCCACCATGCTAGCTTTCTGAATGCCTGTAAGAAGCAAAGGGCTGTTCCG
EST: TGGATCTATTGGAAAGCATGGAGCAAAAGGGATTGCTTGATATGAATAAG ATCCACCATGCTAGCTTTCTGAATGCCTGTAAGAAGCAAAGGGCTGTTCCG
genomic: TGGATCTATTGGAAAGCATGGAGCAAAAGGGATTGCTTGATATGAATAAGgttgttacct ... ctactttcagATCCACCATGCTAGCTTTCTGAATGCCTGTAAGAAGCAAAGGGCTGTTCCG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATTGAAAGACTCTGTGGATCTATTGGAAAGCATGGAGCAAAAGGGATTGCTTGATATGAATAAGgttgttacctgttctaatagtcctttttttagtgtatatcttcttctctttcctgatttccatctactttcag
- - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - GGAGCA