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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAACGATGAGTTCTCTAGGGTCCTCCATCAGCAAATGGAGTACTTCTCCAGCAACCCCAGCGCCGACACACTCAACCGTCTCCGTGGGGAAGTCAGTGAGgcaagtatcctatttatttattgccttccacacaatttcctttcatttttgctctacaatcaaatgctcattcttccaacttgcattgtgcag

Basic information

species Oryza sativa
transcript LOC_Os10g06540.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os10g06540.2 (Oryza sativa), 5'ss of exon 1
lower sequence: GRMZM2G149843_T02 (Zea mays), 5'ss of exon 2
GAACGATGAGTTCTCTAGGGTCCTCCATCAGCAAATGGAGTACTTCTCCAGCAACCCCAGCGCCGACACACTCAACCGTCTCCGTGGGGAAGTCAGTGAGgcaagtatcctatttatttattgccttccacacaatttcctttcatttttgctctacaatcaaatgctcattcttccaacttgcattgtgcag
||||||||||||||| || || ||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||| |||||||| |||||||| | | |   |    ||          | |  |   || | | | |    ||| ||      |||   || |  ||| |||        
GAACGATGAGTTCTCCAGAGTGCTCCATCAGCAAATGGAGTTCTTCTCCAGCAACCCAAGCGCCGACACACTCAACCGTCTCCGTGGAGAAGTCAGCGAGgcaagcaccttcccttcccatcaaaccgagtaaatgtctgttccgtctctctggtacgatatccaactctaactccgtact-gcag-------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|218487714|gb|FG953257.1|FG953257
EST:     GCAACCCCAGCGCCGACACACTCAACCGTCTCCGTGGGGAAGTCAGTGAG                         ATACATACTGTCATGGTTGACAACATTGAGAAGATTCTCGACAGAGGTGAG
genomic: GCAACCCCAGCGCCGACACACTCAACCGTCTCCGTGGGGAAGTCAGTGAGgcaagtatcc ... cattgtgcagATACATACTGTCATGGTTGACAACATTGAGAAGATTCTCGACAGAGGTGAG
EST: gi|4715901|gb|AU057017.1|AU057017
EST:     GCAACCCCAGCGCCGACACACTCAACCGTCTCCGTGGGGAAGTCAGTGAG                         ATACATACTGTCATGGTTGACAACATTGAGAAGATTCTCGACAGAGGTGAG
genomic: GCAACCCCAGCGCCGACACACTCAACCGTCTCCGTGGGGAAGTCAGTGAGgcaagtatcc ... cattgtgcagATACATACTGTCATGGTTGACAACATTGAGAAGATTCTCGACAGAGGTGAG
EST: gi|88845739|gb|CI008736.1|CI008736
EST:     ACACACTCAACCGTCTCCGTGGGGAAGTCAGTGAG                         ATACATACTGTCATGGTTGACAACATTGAGAAGATTCTCGACAGAGGTGAG
genomic: ACACACTCAACCGTCTCCGTGGGGAAGTCAGTGAGgcaagtatcc ... cattgtgcagATACATACTGTCATGGTTGACAACATTGAGAAGATTCTCGACAGAGGTGAG
EST: gi|218501230|gb|FG958972.1|FG958972
EST:     GCAACCCCAGCGCCGACACACTCAACCGTCTCCGTGGGGAAGTCAGTGAG                         ATACATACTGTCATGGTTGACAACATTGAGAAGATTCTCGACAGAGGTGAG
genomic: GCAACCCCAGCGCCGACACACTCAACCGTCTCCGTGGGGAAGTCAGTGAGgcaagtatcc ... cattgtgcagATACATACTGTCATGGTTGACAACATTGAGAAGATTCTCGACAGAGGTGAG
EST: gi|163927495|gb|EG709951.1|EG709951
EST:     GCAACCCCAGCGCCGACACACTCAACCGTCTCCGTGGGGAAGTCAGTGAG                         ATACATACTGTCATGGTTGACAACATTGAGAAGATTCTCGACAGAGGTGAG
genomic: GCAACCCCAGCGCCGACACACTCAACCGTCTCCGTGGGGAAGTCAGTGAGgcaagtatcc ... cattgtgcagATACATACTGTCATGGTTGACAACATTGAGAAGATTCTCGACAGAGGTGAG
EST: gi|89167265|gb|CI252796.1|CI252796
EST:     GCAACCCCAGCGCCGACACACTCAACCGTCTCCGTGGGGAAGTCAGTGAG                         ATACATACTGTCATGGTTGACAACATTGAGAAGATTCTCGACAGAGGTGAG
genomic: GCAACCCCAGCGCCGACACACTCAACCGTCTCCGTGGGGAAGTCAGTGAGgcaagtatcc ... cattgtgcagATACATACTGTCATGGTTGACAACATTGAGAAGATTCTCGACAGAGGTGAG