1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
TTCTTGGAGAACGGCCTCGCCGGCGTCGACGACATGGCGTTCCATGACTCCTTCATGGATGTCTACACGGCTCAGAGCTTGCACAAGCCATGGTACCTTGgtaatcaccatctaaacctaattaatttccatttaatactatactattagatcatatggatttataaacttactatgtgtttagaactttttttttcttt...
species | Oryza sativa |
transcript | LOC_Os10g02750.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: CTTCATGGATGTCTACACGGCTCAGAGCTTGCACAAGCCATGGTACCTTG TTCTTGGAAACCATGACTACAGGGGAAATGTGCTAGCACAGATTGACCCEST: gi|88572225|gb|CI663796.1|CI663796
genomic: CTTCATGGATGTCTACACGGCTCAGAGCTTGCACAAGCCATGGTACCTTGgtaatcacca ... ttgttttcagTTCTTGGAAACCATGACTACAGGGGAAATGTGCTAGCACAGATTGACCC
EST: CTTCATGGATGTCTACACGGCTCAGAGCTTGCACAAGCCATGGTACCTTG TTCTTGGAAACCATGACTACAGEST: gi|88357935|gb|CI650671.1|CI650671
genomic: CTTCATGGATGTCTACACGGCTCAGAGCTTGCACAAGCCATGGTACCTTGgtaatcacca ... ttgttttcagTTCTTGGAAACCATGACTACAG
EST: CTTCATGGATGTCTACACGGCTCAGAGCTTGCACAAGCCATGGTACCTTG TTCTTGGAAACCATGACTACAGGGGAAATGTGCTAGCACEST: gi|88309510|gb|CI655878.1|CI655878
genomic: CTTCATGGATGTCTACACGGCTCAGAGCTTGCACAAGCCATGGTACCTTGgtaatcacca ... ttgttttcagTTCTTGGAAACCATGACTACAGGGGAAATGTGCTAGCAC
EST: CTTCATGGATGTCTACACGGCTCAGAGCTTGCACAAGCCATGGTACCTTG TTCTTGGAAACCATGACTACAGGGGAAATGTGCTAGCACAGATTGACCCAGEST: gi|88327657|gb|CI646240.1|CI646240
genomic: CTTCATGGATGTCTACACGGCTCAGAGCTTGCACAAGCCATGGTACCTTGgtaatcacca ... ttgttttcagTTCTTGGAAACCATGACTACAGGGGAAATGTGCTAGCACAGATTGACCCAG
EST: CTTCATGGATGTCTACACGGCTCAGAGCTTGCACAAGCCATGGTACCTTG TTCTTGGAAACCATGACTACAEST: gi|88308908|gb|CI654191.1|CI654191
genomic: CTTCATGGATGTCTACACGGCTCAGAGCTTGCACAAGCCATGGTACCTTGgtaatcacca ... ttgttttcagTTCTTGGAAACCATGACTACA
EST: CTTCATGGATGTCTACACGGCTCAGAGCTTGCACAAGCCATGGTACCTTG TTCTTGGAAACCATGACTACAGGGGAAATGTGCTAGCACAGATTGACCCAG
genomic: CTTCATGGATGTCTACACGGCTCAGAGCTTGCACAAGCCATGGTACCTTGgtaatcacca ... ttgttttcagTTCTTGGAAACCATGACTACAGGGGAAATGTGCTAGCACAGATTGACCCAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTCTTGGAGAACGGCCTCGCCGGCGTCGACGACATGGCGTTCCATGACTCCTTCATGGATGTCTACACGGCTCAGAGCTTGCACAAGCCATGGTACCTTGgtaatcaccatctaaacctaattaatttccatttaatactatactattagatcatatggatttataaacttactatgtgtttagaactttttttttcttt
- - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT