1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
AAATCTAGCACAAAATTCATCCCAGGACTCCCAGTCTCCTGTACTCCCCTTGCCCAAGATGTGCAGCGAGCTTTACTTCTTGATTCCGAACAGGAGAGAAgtattacgacttgcatgctccttgcccaagttcttgtcatcatttccaagagcaaaaccatcttgttggctttaatactgatgcagtaactatggtgtcaaattctgtgaccag
species | Oryza sativa |
transcript | LOC_Os09g37710.2 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: TGCCCAAGATGTGCAGCGAGCTTTACTTCTTGATTCCGAACAGGAGAGAA ATTCTGAAGGAAACCTTACCTGCATGGAAGAGGGAGACCCCCAGCCCAGCAEST: gi|88395960|gb|CI593162.1|CI593162
genomic: TGCCCAAGATGTGCAGCGAGCTTTACTTCTTGATTCCGAACAGGAGAGAAgtattacgac ... ctgtgaccagATTCTGAAGGAAACCTTACCTGCATGGAAGAGGGAGACCCCCAGCCCAGCA
EST: TGCCCAAGATGTGCAGCGAGCTTTACTTCTTGATTCCGAACAGGAGAGAA ATTCTGAAGGAAACCTTACCTGCATGGAAGAGGGAGACCCCCAGCCCAGCA
genomic: TGCCCAAGATGTGCAGCGAGCTTTACTTCTTGATTCCGAACAGGAGAGAAgtattacgac ... ctgtgaccagATTCTGAAGGAAACCTTACCTGCATGGAAGAGGGAGACCCCCAGCCCAGCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAATCTAGCACAAAATTCATCCCAGGACTCCCAGTCTCCTGTACTCCCCTTGCCCAAGATGTGCAGCGAGCTTTACTTCTTGATTCCGAACAGGAGAGAAgtattacgacttgcatgctccttgcccaagttcttgtcatcatttccaagagcaaaaccatcttgttggctttaatactgatgcagtaactatggtgtcaaattctgtgaccag
- - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA