1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
GAAGCCGAGGGAGGAGGCGCCCATCAAGGAGAACGAGATCCGCATCACCACGCAGGGGAGGATGCGCAACTACATCACCTACGCGACCACCTTGCTCCAGgtacacctacgcttgcagtttgaatttttcgttttagcgccagaatgtttttttgggttggtttggtagggcttgtggattggtcggtgataactgtttc...
species | Oryza sativa |
transcript | LOC_Os09g37006.2 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: CGCAGGGGAGGATGCGCAACTACATCACCTACGCGACCACCTTGCTCCAG GATAAAGGTTCCGATGAAGTTGTATTCAAGGCAATGGGGAGGGCAATCAACEST: gi|88315295|gb|CI613564.1|CI613564
genomic: CGCAGGGGAGGATGCGCAACTACATCACCTACGCGACCACCTTGCTCCAGgtacacctac ... ttcacaaaagGATAAAGGTTCCGATGAAGTTGTATTCAAGGCAATGGGGAGGGCAATCAAC
EST: CGCAGGGGAGGATGCGCAACTACATCACCTACGCGACCACCTTGCTCCAG GATAAAGGTTCCGATGAAGTTGTATTCAAGGCAATGGGGAGGGCAATCAACEST: gi|88368284|gb|CI575166.1|CI575166
genomic: CGCAGGGGAGGATGCGCAACTACATCACCTACGCGACCACCTTGCTCCAGgtacacctac ... ttcacaaaagGATAAAGGTTCCGATGAAGTTGTATTCAAGGCAATGGGGAGGGCAATCAAC
EST: GCAGGGGAGGATGCGCAACTACATCACCTACGCGACCACCCTTGCTCCAG GATAAAGGTTCCGATGAAGTTGTATTCAAGGCAATGGGGAGGGCAATCAACEST: gi|58695347|gb|CK084034.1|CK084034
genomic: GCAGGGGAGGATGCGCAACTACATCACCTACGCGACCACC-TTGCTCCAGgtacacctac ... ttcacaaaagGATAAAGGTTCCGATGAAGTTGTATTCAAGGCAATGGGGAGGGCAATCAAC
EST: CGCA-GGGAGGATGCGCAACTACATCACCTACGCGACCACCTTGCTCCAG GATAAAGGTTCCGATGAAGTTGTATTCAAGGCAATGGGGAGGGCAATCAACEST: gi|88372142|gb|CI641777.1|CI641777
genomic: CGCAGGGGAGGATGCGCAACTACATCACCTACGCGACCACCTTGCTCCAGgtacacctac ... ttcacaaaagGATAAAGGTTCCGATGAAGTTGTATTCAAGGCAATGGGGAGGGCAATCAAC
EST: CGCAGGGGAGGATGCGCAACTACATCACCTACGCGACCACCTTGCTCCAG GATAAAGGTTCCGATGAAGTTGTATTCAAGGCAATGGGGAGGGCAATCAACEST: gi|88373354|gb|CI614690.1|CI614690
genomic: CGCAGGGGAGGATGCGCAACTACATCACCTACGCGACCACCTTGCTCCAGgtacacctac ... ttcacaaaagGATAAAGGTTCCGATGAAGTTGTATTCAAGGCAATGGGGAGGGCAATCAAC
EST: CGCAGGGGAGGATGCGCAACTACATCACCTACGCGACCACCTTGCTCCAG GATAAAGGTTCCGATGAAGTTGTATTCAAGGCAATGGGGAGGGCAATCAACEST: gi|58602816|gb|CK013344.1|CK013344
genomic: CGCAGGGGAGGATGCGCAACTACATCACCTACGCGACCACCTTGCTCCAGgtacacctac ... ttcacaaaagGATAAAGGTTCCGATGAAGTTGTATTCAAGGCAATGGGGAGGGCAATCAAC
EST: CGCAGGGGAGGATGCGCAACTACATCACCTACGCGACCACCTTGCTCCAG GATAAAGGTTCCGATGAAGTTGTATTCAAGGCAATGGGGAGGGCAATCAACEST: gi|88573574|gb|CI665343.1|CI665343
genomic: CGCAGGGGAGGATGCGCAACTACATCACCTACGCGACCACCTTGCTCCAGgtacacctac ... ttcacaaaagGATAAAGGTTCCGATGAAGTTGTATTCAAGGCAATGGGGAGGGCAATCAAC
EST: CGCAGGGGAGGATGCGCAACTACATCACCTACGCGACCACCTTGCTCCAG GATAAAGGTTCCGATGAAGTTGTATTCAAGGCAATGGGGAGGGCAATCAACEST: gi|3761424|gb|C98672.1|C98672
genomic: CGCAGGGGAGGATGCGCAACTACATCACCTACGCGACCACCTTGCTCCAGgtacacctac ... ttcacaaaagGATAAAGGTTCCGATGAAGTTGTATTCAAGGCAATGGGGAGGGCAATCAAC
EST: CGCAGGGGAGGATGCGCAACTACATCACCTACGCGACCACCTTGCTCCAG GATAAAGGTTCCGATGAAGTTGTATTCAAGGCAATGGGGAGGGCAATCAAC
genomic: CGCAGGGGAGGATGCGCAACTACATCACCTACGCGACCACCTTGCTCCAGgtacacctac ... ttcacaaaagGATAAAGGTTCCGATGAAGTTGTATTCAAGGCAATGGGGAGGGCAATCAAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAAGCCGAGGGAGGAGGCGCCCATCAAGGAGAACGAGATCCGCATCACCACGCAGGGGAGGATGCGCAACTACATCACCTACGCGACCACCTTGCTCCAGgtacacctacgcttgcagtttgaatttttcgttttagcgccagaatgtttttttgggttggtttggtagggcttgtggattggtcggtgataactgtttc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG