Skip to another splice site:
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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTGCTGGACCAGGAGGACGTGGACAAGGTCCCCCAGGCGGACAGCGACCGGGGCATCACGCTGGAGGAGTTCCGCCTCGTCAAGATCCACATGTCCTTCCgtgagcttctcctccctttagctttcctgtgatgctttcgttgacgcgaatttgttctcagctccgggctcggtgtgattgcctggtttctggaattggg...

Basic information

species Oryza sativa
transcript LOC_Os09g32680.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os09g32680.1 (Oryza sativa), 5'ss of exon 2
lower sequence: GRMZM2G408242_T04 (Zea mays), 5'ss of exon 2
CTGCTGGACCAGGAGGACGTGGACAAGGTCCCCCAGGCGGACAGCGACCGGGGCATCACGCTGGAGGAGTTCCGCCTCGTCAAGATCCACATGTCCTTCCgtgagcttctcctccctttagctttcctgtgatgcttt-cgttgacgcgaatttgttc---tcagctccgggctcggtgtgattgcctggtttctggaattggg
||||||||||  ||||||||||||  ||| ||   ||||||| | || || |||||||||| ||| |||||||||||| |||||||||| ||||| ||||||||||| ||   | |  |||  ||    |||  | || | ||  |         |     ||||||   |  ||        |  |||  || || | |    
CTGCTGGACCCCGAGGACGTGGACCTGGTGCCGGCGGCGGACCGGGAGCGAGGCATCACGCCGGAAGAGTTCCGCCTCATCAAGATCCATATGTCGTTCCgtgagctcctatcctcgctagtcttttcctgacaccttgcattatcatttcccgatgtgaatcagctttagattctacactgct-tctgtattgtgcacta---
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88672189|gb|CI726305.1|CI726305
EST:     GGGCATCACGCTGGAGGAGTTCCGCCTCGTCAAGATCCACATGTCCTTCC                         ATATCTGGCGATTGGCACAACAGGTGAAAGTTAGACAAAG
genomic: GGGCATCACGCTGGAGGAGTTCCGCCTCGTCAAGATCCACATGTCCTTCCgtgagcttct ... atgatttcagATATCTGGCGATTGGCACAACAGGTGAAAGTTAGACAAAG
EST: gi|218486157|gb|FG964429.1|FG964429
EST:     GGGCATCACGCCGGAGGAGTTCCGCCTCGTCAAGATCCACATGTCCTTCC                         ATATCTGGCGATTGGCACAACAGGTGAAAGTTAGACAAAG
genomic: GGGCATCACGCTGGAGGAGTTCCGCCTCGTCAAGATCCACATGTCCTTCCgtgagcttct ... atgatttcagATATCTGGCGATTGGCACAACAGGTGAAAGTTAGACAAAG
EST: gi|38568817|gb|CD671032.1|CD671032
EST:     GGGCATCACGCTGGAGGAGTTCCGCCTCGTCAAGATCCACATGTCCTTCC                         ATATCTGGCGATTGGCACAACAGGTGAAAGTTAGACAAAG
genomic: GGGCATCACGCTGGAGGAGTTCCGCCTCGTCAAGATCCACATGTCCTTCCgtgagcttct ... atgatttcagATATCTGGCGATTGGCACAACAGGTGAAAGTTAGACAAAG
EST: gi|88573905|gb|CI665674.1|CI665674
EST:     GGGCATCACGCTGGAGGAGTTCCGCCTCGTCAAGATCCACATGTCCTTCC                         ATATCTGGCGATTGGCACAACAGGTGAAAGTTAGACAAAG
genomic: GGGCATCACGCTGGAGGAGTTCCGCCTCGTCAAGATCCACATGTCCTTCCgtgagcttct ... atgatttcagATATCTGGCGATTGGCACAACAGGTGAAAGTTAGACAAAG
EST: gi|87024052|gb|CI291705.1|CI291705
EST:     GGGCATCACGCTGGAGGAGTTCCGCCTCGTCAAGATCCACATGTCCTTCC                         ATATCTGGCGATTGGCACAACAGGTGAAAGTTAGACAAAG
genomic: GGGCATCACGCTGGAGGAGTTCCGCCTCGTCAAGATCCACATGTCCTTCCgtgagcttct ... atgatttcagATATCTGGCGATTGGCACAACAGGTGAAAGTTAGACAAAG
EST: gi|88670127|gb|CI724243.1|CI724243
EST:     GGGCATCACGCTGGAGGAGTTCCGCCTCGTCAAGATCCACATGTCCTTCC                         ATATCTGGCGATTGGCACAACAGGTGAAAGTTAGACAAAG
genomic: GGGCATCACGCTGGAGGAGTTCCGCCTCGTCAAGATCCACATGTCCTTCCgtgagcttct ... atgatttcagATATCTGGCGATTGGCACAACAGGTGAAAGTTAGACAAAG
EST: gi|88761182|gb|CI770738.1|CI770738
EST:     GGGCATCACGCTGGAGGAGTTCCGCCTCGTCAAGATCCACATGTCCTTCC                         ATATCTGGCGATTGGCACAACAGGTGAAAGTTAGACAAAG
genomic: GGGCATCACGCTGGAGGAGTTCCGCCTCGTCAAGATCCACATGTCCTTCCgtgagcttct ... atgatttcagATATCTGGCGATTGGCACAACAGGTGAAAGTTAGACAAAG
EST: gi|88345571|gb|CI629832.1|CI629832
EST:     GGGCATCACGCTGGAGGAGTTCCGCCTCGTCAAGATCCACATGTCCTTCC                         ATATCTGGCGATTGGCACAACAGGTGAAAGTTAGACAAAG
genomic: GGGCATCACGCTGGAGGAGTTCCGCCTCGTCAAGATCCACATGTCCTTCCgtgagcttct ... atgatttcagATATCTGGCGATTGGCACAACAGGTGAAAGTTAGACAAAG
EST: gi|88672567|gb|CI726683.1|CI726683
EST:     GGGCATCACGCTGGAGGAGTTCCGCCTCGTCAAGATCCACATGTCCTTCC                         ATATCTGGCGATTGGCACAACAGGTGAAAGTTAGACAAAG
genomic: GGGCATCACGCTGGAGGAGTTCCGCCTCGTCAAGATCCACATGTCCTTCCgtgagcttct ... atgatttcagATATCTGGCGATTGGCACAACAGGTGAAAGTTAGACAAAG
EST: gi|88313296|gb|CI594926.1|CI594926
EST:     GGGCATCACGCTGGAGGAGTTCCGCCTCGTCAAGATCCACATGTCCTTCC                         ATATCTGGCGATTGGCACAACAGGTGAAAGTTAGACAAAG
genomic: GGGCATCACGCTGGAGGAGTTCCGCCTCGTCAAGATCCACATGTCCTTCCgtgagcttct ... atgatttcagATATCTGGCGATTGGCACAACAGGTGAAAGTTAGACAAAG
EST: gi|88309145|gb|CI654764.1|CI654764
EST:     GGGCATCACGCTGGAGGAGTTCCGCCTCGTCAAGATCCACATGTCCTTCC                         ATATCTGGCGATTGGCACAACAGGTGAAAGTTAGACAAAG
genomic: GGGCATCACGCTGGAGGAGTTCCGCCTCGTCAAGATCCACATGTCCTTCCgtgagcttct ... atgatttcagATATCTGGCGATTGGCACAACAGGTGAAAGTTAGACAAAG
EST: gi|88694968|gb|CI739006.1|CI739006
EST:     GGGCATCACGCTGGAGGAGTTCCGCCTCGTCAAGATCCACATGTCCTTCC                         ATATCTGGCGATTGGCACAACAGGTGAAAGTTAGACAAAG
genomic: GGGCATCACGCTGGAGGAGTTCCGCCTCGTCAAGATCCACATGTCCTTCCgtgagcttct ... atgatttcagATATCTGGCGATTGGCACAACAGGTGAAAGTTAGACAAAG
EST: gi|88390329|gb|CI607365.1|CI607365
EST:     GGGCATCACGCTGGAGGAGTTCCGCCTCGTCAAGATCCACATGTCCTTCC                         ATATCTGGCGATTGGCACAACAGGTGAAAGTTAGACAAAG
genomic: GGGCATCACGCTGGAGGAGTTCCGCCTCGTCAAGATCCACATGTCCTTCCgtgagcttct ... atgatttcagATATCTGGCGATTGGCACAACAGGTGAAAGTTAGACAAAG
EST: gi|88909071|gb|CI718379.1|CI718379
EST:     GGGCATCACGCTGGAGGAGTTCCGCCTCGTCAAGATCCACATGTCCTTCC                         ATATCTGGCGATTGGCACAACAGGTGAAAGTTAGACAAAG
genomic: GGGCATCACGCTGGAGGAGTTCCGCCTCGTCAAGATCCACATGTCCTTCCgtgagcttct ... atgatttcagATATCTGGCGATTGGCACAACAGGTGAAAGTTAGACAAAG
EST: gi|88826715|gb|CI777280.1|CI777280
EST:     GGGCATCACGCTGGAGGAGTTCCGCCTCGTCAAGATCCACATGTCCTTCC                         ATATCTGGCGATTGGCACAACAGGTGAAAGTTAGACAAAG
genomic: GGGCATCACGCTGGAGGAGTTCCGCCTCGTCAAGATCCACATGTCCTTCCgtgagcttct ... atgatttcagATATCTGGCGATTGGCACAACAGGTGAAAGTTAGACAAAG
EST: gi|88732334|gb|CI755511.1|CI755511
EST:     GGGCATCACGCTGGAGGAGTTCCGCCTCGTCAAGATCCACATGTCCTTCC                         ATATCTGGCGATTGGCACAACAGGTGAAAGTTAGACAAAG
genomic: GGGCATCACGCTGGAGGAGTTCCGCCTCGTCAAGATCCACATGTCCTTCCgtgagcttct ... atgatttcagATATCTGGCGATTGGCACAACAGGTGAAAGTTAGACAAAG
EST: gi|88368731|gb|CI645189.1|CI645189
EST:     GGGCATCACGCTGGAGGAGTTCCGCCTCGTCAAGATCCACATGTCCTTCC                         ATATCTGGCGATTGGCACAACAGGTGAAAGTTAGACAAAG
genomic: GGGCATCACGCTGGAGGAGTTCCGCCTCGTCAAGATCCACATGTCCTTCCgtgagcttct ... atgatttcagATATCTGGCGATTGGCACAACAGGTGAAAGTTAGACAAAG
EST: gi|88828064|gb|CI778629.1|CI778629
EST:     GGGCATCACGCTGGAGGAGTTCCGCCTCGTCAAGATCCACATGTCCTTCC                         ATATCTGGCGATTGGCACAACAGGTGAAAGTTAGACAAAG
genomic: GGGCATCACGCTGGAGGAGTTCCGCCTCGTCAAGATCCACATGTCCTTCCgtgagcttct ... atgatttcagATATCTGGCGATTGGCACAACAGGTGAAAGTTAGACAAAG
EST: gi|88387197|gb|CI580542.1|CI580542
EST:     GGGCATCACGCTGGAGGAGTTCCGCCTCGTCAAGATCCACATGTCCTTCC                         ATATCTGGCGATTGGCACAACAGGTGAAAGTTAGACAAAG
genomic: GGGCATCACGCTGGAGGAGTTCCGCCTCGTCAAGATCCACATGTCCTTCCgtgagcttct ... atgatttcagATATCTGGCGATTGGCACAACAGGTGAAAGTTAGACAAAG
EST: gi|88306131|gb|CI636509.1|CI636509
EST:     GGGCATCACGCTGGAGGAGTTCCGCCTCGTCAAGATCCACATGTCCTTCC                         ATATCTGGCGATTGGCACAACAGGTGAAAGTTAGACAAAG
genomic: GGGCATCACGCTGGAGGAGTTCCGCCTCGTCAAGATCCACATGTCCTTCCgtgagcttct ... atgatttcagATATCTGGCGATTGGCACAACAGGTGAAAGTTAGACAAAG
EST: gi|88332007|gb|CI642232.1|CI642232
EST:     GGGCATCACGCTGGAGGAGTTCCGCCTCGTCAAGATCCACATGTCCTTCC                         ATATCTGGCGATTGGCACAACAGGTGAAAGTTAGACAAAG
genomic: GGGCATCACGCTGGAGGAGTTCCGCCTCGTCAAGATCCACATGTCCTTCCgtgagcttct ... atgatttcagATATCTGGCGATTGGCACAACAGGTGAAAGTTAGACAAAG
EST: gi|58688702|gb|CK077389.1|CK077389
EST:     GGGCATCACGCCGGAGGAGTTCCGCCTCGTCAAGATCCACATGTCCTTCC                         ATATCTGGCGATTGGCACAACAGGTGAAAGTTAGACAAAG
genomic: GGGCATCACGCTGGAGGAGTTCCGCCTCGTCAAGATCCACATGTCCTTCCgtgagcttct ... atgatttcagATATCTGGCGATTGGCACAACAGGTGAAAGTTAGACAAAG
EST: gi|88360541|gb|CI608393.1|CI608393
EST:     GGGCATCACGCTGGAGGAGTTCCGCCTCGTCA-GATCCACATGTCCTTCC                         ATATCTGGCGATTGGCACAACAGGTGAAAGTTAGACAAAG
genomic: GGGCATCACGCTGGAGGAGTTCCGCCTCGTCAAGATCCACATGTCCTTCCgtgagcttct ... atgatttcagATATCTGGCGATTGGCACAACAGGTGAAAGTTAGACAAAG
EST: gi|88372851|gb|CI640302.1|CI640302
EST:     GGGCATCACGCTGGAGGAGTTCCGCCTCGTCAAGATCCACATGTCCTTCC                         ATATCTGGCGATTGGCACAACAGGTGAAAGTTAGACAAAG
genomic: GGGCATCACGCTGGAGGAGTTCCGCCTCGTCAAGATCCACATGTCCTTCCgtgagcttct ... atgatttcagATATCTGGCGATTGGCACAACAGGTGAAAGTTAGACAAAG
EST: gi|88959445|gb|CI716814.1|CI716814
EST:     GGGCATCACGCTGGAGGAGTTCCGCCTCGTCAAGATCCACATGTCCTTCC                         ATATCTGGCGATTGGCACAACAGGTGAAAGTTAGACAAAG
genomic: GGGCATCACGCTGGAGGAGTTCCGCCTCGTCAAGATCCACATGTCCTTCCgtgagcttct ... atgatttcagATATCTGGCGATTGGCACAACAGGTGAAAGTTAGACAAAG
EST: gi|88739887|gb|CI761397.1|CI761397
EST:     GGGCATCACGCTGGAGGAGTTCCGCCTCGTCAAGATCCACATGTCCTTCC                         ATATCTGGCGATTGGCACAACAGGTGAAAGTTAGACAAAG
genomic: GGGCATCACGCTGGAGGAGTTCCGCCTCGTCAAGATCCACATGTCCTTCCgtgagcttct ... atgatttcagATATCTGGCGATTGGCACAACAGGTGAAAGTTAGACAAAG
EST: gi|88571405|gb|CI662778.1|CI662778
EST:     GGGCATCACGCTGGAGGAGTTCCGCCTCGTCAAGATCCACATGTCCTTCC                         ATATCTGGCGATTGGCACAACAGGTGAAAGTTAGACAAAG
genomic: GGGCATCACGCTGGAGGAGTTCCGCCTCGTCAAGATCCACATGTCCTTCCgtgagcttct ... atgatttcagATATCTGGCGATTGGCACAACAGGTGAAAGTTAGACAAAG
EST: gi|88389465|gb|CI600634.1|CI600634
EST:     GGGCATCACGCTGGAGGAGTTCCGCCTCGTCAAGATCCACATGTCCTTCC                         ATATCTGGCGATTGGCACAACAGGTGAAAGTTAGACAAAG
genomic: GGGCATCACGCTGGAGGAGTTCCGCCTCGTCAAGATCCACATGTCCTTCCgtgagcttct ... atgatttcagATATCTGGCGATTGGCACAACAGGTGAAAGTTAGACAAAG
EST: gi|88574567|gb|CI666336.1|CI666336
EST:     GGGCATCACGCTGGAGGAGTTCCGCCTCGTCAAGATCCACATGTCCTTCC                         ATATCTGGCGATTGGCACAACAGGTGAAAGTTAGACAAAG
genomic: GGGCATCACGCTGGAGGAGTTCCGCCTCGTCAAGATCCACATGTCCTTCCgtgagcttct ... atgatttcagATATCTGGCGATTGGCACAACAGGTGAAAGTTAGACAAAG
EST: gi|88362226|gb|CI608617.1|CI608617
EST:     GGGCATCACGCTGGAGGAGTTCCGCCTCGTCAAGATCCACATGTCCTTCC                         ATATCTGGCGATTGGCACAACAGGTGAAAGTTAGACAAAG
genomic: GGGCATCACGCTGGAGGAGTTCCGCCTCGTCAAGATCCACATGTCCTTCCgtgagcttct ... atgatttcagATATCTGGCGATTGGCACAACAGGTGAAAGTTAGACAAAG
EST: gi|88958928|gb|CI685739.1|CI685739
EST:     GGGCATCACGCTGGAGGAGTTCCGCCTCGTCAAGATCCACATGTCCTTCC                         ATATCTGGCGATTGGCACAACAGGTGAAAGTTAGACAAAG
genomic: GGGCATCACGCTGGAGGAGTTCCGCCTCGTCAAGATCCACATGTCCTTCCgtgagcttct ... atgatttcagATATCTGGCGATTGGCACAACAGGTGAAAGTTAGACAAAG
EST: gi|88669768|gb|CI723884.1|CI723884
EST:     GGGCATCACGCTGGAGGAGTTCCGCCTCGTCAAGATCCACATGTCCTTCC                         ATATCTGGCGATTGGCACAACAGGTGAAAGTTAGACAAAG
genomic: GGGCATCACGCTGGAGGAGTTCCGCCTCGTCAAGATCCACATGTCCTTCCgtgagcttct ... atgatttcagATATCTGGCGATTGGCACAACAGGTGAAAGTTAGACAAAG
EST: gi|88741845|gb|CI764350.1|CI764350
EST:     GGGCATCACGCTGGAGGAGTTCCGCCTCGTCAAGATCCACATGTCCTTCC                         ATATCTGGCGATTGGCACAACAGGTGAAAGTTAGACAAAG
genomic: GGGCATCACGCTGGAGGAGTTCCGCCTCGTCAAGATCCACATGTCCTTCCgtgagcttct ... atgatttcagATATCTGGCGATTGGCACAACAGGTGAAAGTTAGACAAAG
EST: gi|88290448|gb|CI665237.1|CI665237
EST:     GGGCATCACGCTGGAGGAGTTCCGCCTCGTCAAGATCCACATGTCCTTCC                         ATATCTGGCGATTGGCACAACAGGTGAAAGTTAGACAAAG
genomic: GGGCATCACGCTGGAGGAGTTCCGCCTCGTCAAGATCCACATGTCCTTCCgtgagcttct ... atgatttcagATATCTGGCGATTGGCACAACAGGTGAAAGTTAGACAAAG
EST: gi|88377693|gb|CI605528.1|CI605528
EST:     GGGCATCACGCTGGAGGAGTTCCGCCTCGTCAAGATCCACATGTCCTTCC                         ATATCTGGCGATTGGCACAACAGGTGAAAGTTAGACAAAG
genomic: GGGCATCACGCTGGAGGAGTTCCGCCTCGTCAAGATCCACATGTCCTTCCgtgagcttct ... atgatttcagATATCTGGCGATTGGCACAACAGGTGAAAGTTAGACAAAG
EST: gi|88300294|gb|CI584713.1|CI584713
EST:     GGGCATCACGCTGGAGGAGTTCCGCCTCGTCAAGATCCACATGTCCTTCC                         ATATCTGGCGATTGGCACAACAGGTGAAAGTTAGACAAAG
genomic: GGGCATCACGCTGGAGGAGTTCCGCCTCGTCAAGATCCACATGTCCTTCCgtgagcttct ... atgatttcagATATCTGGCGATTGGCACAACAGGTGAAAGTTAGACAAAG
EST: gi|88395660|gb|CI590675.1|CI590675
EST:     GGGCATCACGCTGGAGGAGTTCCGCCTCGTCAAGATCCACATGTCCTTCC                         ATATCTGGCGATTGGCACAAAAGGTGAAAGTTAGACAAAG
genomic: GGGCATCACGCTGGAGGAGTTCCGCCTCGTCAAGATCCACATGTCCTTCCgtgagcttct ... atgatttcagATATCTGGCGATTGGCACAACAGGTGAAAGTTAGACAAAG
EST: gi|58598688|gb|CK009216.1|CK009216
EST:     GGGCATCACGCCGGAGGAGTTCCGCCTCGTCAAGATCCACATGTCCTTCC                         ATATCTGGCGATTGGCACAACAGGTGAAAGTTAGACAAAG
genomic: GGGCATCACGCTGGAGGAGTTCCGCCTCGTCAAGATCCACATGTCCTTCCgtgagcttct ... atgatttcagATATCTGGCGATTGGCACAACAGGTGAAAGTTAGACAAAG
EST: gi|58657666|gb|CK046346.1|CK046346
EST:     GGGCATCACGCCGGAGGAGTTCCGCCTCGTCAAGATCCACATGTCCTTCC                         ATATCTGGCGATTGGCACAACAGGTGAAAGTTAGACAAAG
genomic: GGGCATCACGCTGGAGGAGTTCCGCCTCGTCAAGATCCACATGTCCTTCCgtgagcttct ... atgatttcagATATCTGGCGATTGGCACAACAGGTGAAAGTTAGACAAAG
EST: gi|88360472|gb|CI608398.1|CI608398
EST:     GGGCATCACGCTGGAGGAGTTCCGCCTCGTCAAGATCCACATGTCCTTCC                         ATATCTGGCGATTGGCACAACAGGTGAAAGTTAGACAA-G
genomic: GGGCATCACGCTGGAGGAGTTCCGCCTCGTCAAGATCCACATGTCCTTCCgtgagcttct ... atgatttcagATATCTGGCGATTGGCACAACAGGTGAAAGTTAGACAAAG
EST: gi|88351442|gb|CI627458.1|CI627458
EST:     GGGCATCACGCTGGAGGAGTTCCGCCTCGTCAAGATCCACATGTCCTTCC                         ATATCTGGCGATTGGCACAACAGGTGAAAGTTAGACAAAG
genomic: GGGCATCACGCTGGAGGAGTTCCGCCTCGTCAAGATCCACATGTCCTTCCgtgagcttct ... atgatttcagATATCTGGCGATTGGCACAACAGGTGAAAGTTAGACAAAG
EST: gi|88828105|gb|CI778670.1|CI778670
EST:     GGGCATCACGCTGGAGGAGTTCCGCCTCGTCAAGATCCACATGTCCTTCC                         ATATCTGGCGATTGGCACAACAGGTGAAAGTTAGACAAAG
genomic: GGGCATCACGCTGGAGGAGTTCCGCCTCGTCAAGATCCACATGTCCTTCCgtgagcttct ... atgatttcagATATCTGGCGATTGGCACAACAGGTGAAAGTTAGACAAAG
EST: gi|29660227|gb|CB656502.1|CB656502
EST:     GGGCATCACGCTGGAGGAGTTCCGCCTCGTCAAGATCCACATGTCCTTCC                         ATATCTGGCGATTGGCACAACAGGTGAAAGTTAGACAAAG
genomic: GGGCATCACGCTGGAGGAGTTCCGCCTCGTCAAGATCCACATGTCCTTCCgtgagcttct ... atgatttcagATATCTGGCGATTGGCACAACAGGTGAAAGTTAGACAAAG
EST: gi|88671988|gb|CI726104.1|CI726104
EST:     GGGCATCACGCTGGAGGAGTTCCGCCTCGTCAAGATCCACATGTCCTTCC                         ATATCTGGCGATTGGCACAACAGGTGAAAGTTAGACAAAG
genomic: GGGCATCACGCTGGAGGAGTTCCGCCTCGTCAAGATCCACATGTCCTTCCgtgagcttct ... atgatttcagATATCTGGCGATTGGCACAACAGGTGAAAGTTAGACAAAG
EST: gi|88320137|gb|CI644729.1|CI644729
EST:     GGGCATCACGCTGGAGGAGTTCCGCCTCGTCAAGATCCACATGTCCTTCC                         ATATCTGGCGATTGGCACAACAGGTGAAAGTTAGACAAAG
genomic: GGGCATCACGCTGGAGGAGTTCCGCCTCGTCAAGATCCACATGTCCTTCCgtgagcttct ... atgatttcagATATCTGGCGATTGGCACAACAGGTGAAAGTTAGACAAAG
EST: gi|88576455|gb|CI670600.1|CI670600
EST:     GGGCATCACGCTGGAGGAGTTCCGCCTCGTCAAGATCCACATGTCCTTCC                         ATATCTGGCGATTGGCACAACAGGTGAAAGTTAGACAAAG
genomic: GGGCATCACGCTGGAGGAGTTCCGCCTCGTCAAGATCCACATGTCCTTCCgtgagcttct ... atgatttcagATATCTGGCGATTGGCACAACAGGTGAAAGTTAGACAAAG
EST: gi|88739870|gb|CI761380.1|CI761380
EST:     GGGCATCACGCTGGAGGAGTTCCGCCTCGTCAAGATCCACATGTCCTTCC                         ATATCTGGCGATTGGCACAACAGGTGAAAGTTAGACAAAG
genomic: GGGCATCACGCTGGAGGAGTTCCGCCTCGTCAAGATCCACATGTCCTTCCgtgagcttct ... atgatttcagATATCTGGCGATTGGCACAACAGGTGAAAGTTAGACAAAG
EST: gi|88594716|gb|CI714674.1|CI714674
EST:     GGGCATCACGCTGGAGGAGTTCCGCCTCGTCAAGATCCACATGTCCTTCC                         ATATCTGGCGATTGGCACAACAGGTGAAAGTTAGACAAAG
genomic: GGGCATCACGCTGGAGGAGTTCCGCCTCGTCAAGATCCACATGTCCTTCCgtgagcttct ... atgatttcagATATCTGGCGATTGGCACAACAGGTGAAAGTTAGACAAAG
EST: gi|88430967|gb|CI571957.1|CI571957
EST:     GGGCATCACGCTGGAGGAGTTCCGCCTCGTCAAGATCCACATGTCCTTCC                         ATATCTGGCGATTGGCACAACAGGTGAAAGTTAGACAAAG
genomic: GGGCATCACGCTGGAGGAGTTCCGCCTCGTCAAGATCCACATGTCCTTCCgtgagcttct ... atgatttcagATATCTGGCGATTGGCACAACAGGTGAAAGTTAGACAAAG
EST: gi|218483409|gb|FG950971.1|FG950971
EST:     GGGCATCACGCCGGAGGAGTTCCGCCTCGTCAAGATCCACATGTCCTTCC                         ATATCTGGCGATTGGCACAACAGGTGAAAGTTAGACAAAG
genomic: GGGCATCACGCTGGAGGAGTTCCGCCTCGTCAAGATCCACATGTCCTTCCgtgagcttct ... atgatttcagATATCTGGCGATTGGCACAACAGGTGAAAGTTAGACAAAG
EST: gi|218503593|gb|FG957186.1|FG957186
EST:     CATGTCCTTCC                         ATATCTGGCGATTGGCACAACAGGTGAAAGTTAGACAAAG
genomic: CATGTCCTTCCgtgagcttct ... atgatttcagATATCTGGCGATTGGCACAACAGGTGAAAGTTAGACAAAG
EST: gi|88594838|gb|CI714796.1|CI714796
EST:     GGGCATCACGCTGGAGGAGTTCCGCCTCGTCAAGATCCACATGTCCTTCC                         ATATCTGGCGATTGGCACAACAGGTGAAAGTTAGACAAAG
genomic: GGGCATCACGCTGGAGGAGTTCCGCCTCGTCAAGATCCACATGTCCTTCCgtgagcttct ... atgatttcagATATCTGGCGATTGGCACAACAGGTGAAAGTTAGACAAAG
EST: gi|88673257|gb|CI726032.1|CI726032
EST:     GGGCATCACGCTGGAGGAGTTCCGCCTCGTCAAGATCCACATGTCCTTCC                         ATATCTGGCGATTGGCACAACAGGTGAAAGTTAGACAAAG
genomic: GGGCATCACGCTGGAGGAGTTCCGCCTCGTCAAGATCCACATGTCCTTCCgtgagcttct ... atgatttcagATATCTGGCGATTGGCACAACAGGTGAAAGTTAGACAAAG
EST: gi|88590333|gb|CI709179.1|CI709179
EST:     GGGCATCACGCTGGAGGAGTTCCGCCTCGTCAAGATCCACATGTCCTTCC                         ATATCTGGCGATTGGCACAACAGGTGAAAGTTAGACAAAG
genomic: GGGCATCACGCTGGAGGAGTTCCGCCTCGTCAAGATCCACATGTCCTTCCgtgagcttct ... atgatttcagATATCTGGCGATTGGCACAACAGGTGAAAGTTAGACAAAG
EST: gi|88300562|gb|CI587366.1|CI587366
EST:     GGGCATCACGCTGGAGGAGTTCCGCCTCGTCAAGATCCACATGTCCTTCC                         ATATCTGGCGATTGGAACAACAGGTGAAAGTTAGAAAAAG
genomic: GGGCATCACGCTGGAGGAGTTCCGCCTCGTCAAGATCCACATGTCCTTCCgtgagcttct ... atgatttcagATATCTGGCGATTGGCACAACAGGTGAAAGTTAGACAAAG
EST: gi|88737852|gb|CI760991.1|CI760991
EST:     GGGCATCACGCTGGAGGAGTTCCGCCTCGTCAAGATCCACATGTCCTTCC                         ATATCTGGCGATTGGCACAACAGGTGAAAGTTAGACAAAG
genomic: GGGCATCACGCTGGAGGAGTTCCGCCTCGTCAAGATCCACATGTCCTTCCgtgagcttct ... atgatttcagATATCTGGCGATTGGCACAACAGGTGAAAGTTAGACAAAG
EST: gi|88743374|gb|CI766882.1|CI766882
EST:     GGGCATCACGCTGGAGGAGTTCCGCCTCGTCAAGATCCACATGTCCTTCC                         ATATCTGGCGATTGGCACAACAGGTGAAAGTTAGACAAAG
genomic: GGGCATCACGCTGGAGGAGTTCCGCCTCGTCAAGATCCACATGTCCTTCCgtgagcttct ... atgatttcagATATCTGGCGATTGGCACAACAGGTGAAAGTTAGACAAAG
EST: gi|58592302|gb|CF990610.1|CF990610
EST:     GGCATCACGCCGGAGGAGTTCCGCCTCGTCAAGATCCACAGTGTCCTTCC                         ATATCTGGCGATTGGCACAACAGGTGAAAGTTAGACAAAG
genomic: GGCATCACGCTGGAGGAGTTCCGCCTCGTCAAGATCCACA-TGTCCTTCCgtgagcttct ... atgatttcagATATCTGGCGATTGGCACAACAGGTGAAAGTTAGACAAAG
EST: gi|88743467|gb|CI766975.1|CI766975
EST:     GGGCATCACGCTGGAGGAGTTCCGCCTCGTCAAGATCCACATGTCCTTCC                         ATATCTGGCGATTGGCACAACAGGTGAAAGTTAGACAAAG
genomic: GGGCATCACGCTGGAGGAGTTCCGCCTCGTCAAGATCCACATGTCCTTCCgtgagcttct ... atgatttcagATATCTGGCGATTGGCACAACAGGTGAAAGTTAGACAAAG
EST: gi|88396093|gb|CI595641.1|CI595641
EST:     GGGCATCACGCTGGAGGAGTTCCGCCTCGTCAAGATCCACATGTCCTTCC                         ATATCTGGCGATTGGCACAACAGGTGAAAGTTAGACAAAG
genomic: GGGCATCACGCTGGAGGAGTTCCGCCTCGTCAAGATCCACATGTCCTTCCgtgagcttct ... atgatttcagATATCTGGCGATTGGCACAACAGGTGAAAGTTAGACAAAG
EST: gi|58601384|gb|CK011912.1|CK011912
EST:     GGGCATCACGCCGGAGGAGTTCCGCCTCGTCAAGATCCACATGTCCTTCC                         ATATCTGGCGATTGGCACAACAGGTGAAAGTTAGACAAAG
genomic: GGGCATCACGCTGGAGGAGTTCCGCCTCGTCAAGATCCACATGTCCTTCCgtgagcttct ... atgatttcagATATCTGGCGATTGGCACAACAGGTGAAAGTTAGACAAAG
EST: gi|88972652|gb|CI717378.1|CI717378
EST:     GGGCATCACGCTGGAGGAGTTCCGCCTCGTCAAGATCCACATGTCCTTCC                         ATATCTGGCGATTGGCACAACAGGTGAAAGTTAGACAAAG
genomic: GGGCATCACGCTGGAGGAGTTCCGCCTCGTCAAGATCCACATGTCCTTCCgtgagcttct ... atgatttcagATATCTGGCGATTGGCACAACAGGTGAAAGTTAGACAAAG
EST: gi|88303299|gb|CI668947.1|CI668947
EST:     GGGCATCACGCTGGAGGAGTTCCGCCTCGTCAAGATCCACATGTCCTTCC                         ATATCTGGCGATTGGCACAACAGGTGAAAGTTAGACAAAG
genomic: GGGCATCACGCTGGAGGAGTTCCGCCTCGTCAAGATCCACATGTCCTTCCgtgagcttct ... atgatttcagATATCTGGCGATTGGCACAACAGGTGAAAGTTAGACAAAG
EST: gi|27547661|gb|CA765583.2|CA765583
EST:     GCATCACGCCGGAGGAGTTCCGCCTCGTCAAGATCCACATGTCCTTCC                         ATATCTGGCGATTGGCACAACAGGTGAAGGTTAGACAAAG
genomic: GCATCACGCTGGAGGAGTTCCGCCTCGTCAAGATCCACATGTCCTTCCgtgagcttct ... atgatttcagATATCTGGCGATTGGCACAACAGGTGAAAGTTAGACAAAG
EST: gi|58694573|gb|CK083260.1|CK083260
EST:     GGGCATCACGCCGGAGGAGTTCCGCCTCGTCAAGATCCACATGTCCTTCC                         ATATCTGGCGATTGGCACAACAGGTGAAAGTTAGACAAAG
genomic: GGGCATCACGCTGGAGGAGTTCCGCCTCGTCAAGATCCACATGTCCTTCCgtgagcttct ... atgatttcagATATCTGGCGATTGGCACAACAGGTGAAAGTTAGACAAAG
EST: gi|88300050|gb|CI580111.1|CI580111
EST:     GGGCATCACGCTGGAGGAGTTCCGCCTCGTCAAGATCCACATGTCCTTCC                         ATATCTGGCGATTGGAACAACAGGTGAAAGTTAGACAAAG
genomic: GGGCATCACGCTGGAGGAGTTCCGCCTCGTCAAGATCCACATGTCCTTCCgtgagcttct ... atgatttcagATATCTGGCGATTGGCACAACAGGTGAAAGTTAGACAAAG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 70 (upstream exon), 40 (downstream exon)
Score: 49

CTGCTGGACCAGGAGGACGTGGACAAGGTCCCCCAGGCGGACAGCGACCGGGGCATCACGCTGGAGGAGTTCCGCCTCGTCAAGATCCACATGTCCTTCCgtgagcttct ... atgatttcagATATCTGGCGATTGGCACAACAGGTGAAAGTTAGACAAAG




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Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CTGCTGGACCAGGAGGACGTGGACAAGGTCCCCCAGGCGGACAGCGACCGGGGCATCACGCTGGAGGAGTTCCGCCTCGTCAAGATCCACATGTCCTTCCgtgagcttctcctccctttagctttcctgtgatgctttcgttgacgcgaatttgttctcagctccgggctcggtgtgattgcctggtttctggaattggg

- - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctcctcc