1 5' 3' | 2 5' 3' | 3 5' 3' |
GGGGATGCCATGGGGATGAACATGGTGTCCAAGGGCGTCCAGAACGTGCTGGACTACCTTCAGGATGACTTCCCTGACATGGATGTCATCAGCATATCAGgtttttacttcaatttttaagccatgccatgaaccagtatacttgctttacttttgaagtttattagtctgcggtcacacggcggcttatactcttgtca...
species | Oryza sativa |
transcript | LOC_Os09g31970.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: GGACTACCTTCAGGATGACTTCCCTGACATGGATGTCATCAGCATATCAG GTAACTTCTGTTCTGACAAAAAGTCAGCTGCTGTAAATTGGATTGAGGGACEST: gi|29638806|gb|CB643815.1|CB643815
genomic: GGACTACCTTCAGGATGACTTCCCTGACATGGATGTCATCAGCATATCAGgtttttactt ... atacaaacagGTAACTTCTGTTCTGACAAAAAGTCAGCTGCTGTAAATTGGATTGAGGGAC
EST: GGACTACCTTCAGGATGACTTCCCTGACATGGATGTCATCAGCATATCAG GTAACTTCTGTTCTGACAAAAAGTCAGCTGCTGTAAATTGGATTGAGGGACEST: gi|29674292|gb|CB670567.1|CB670567
genomic: GGACTACCTTCAGGATGACTTCCCTGACATGGATGTCATCAGCATATCAGgtttttactt ... atacaaacagGTAACTTCTGTTCTGACAAAAAGTCAGCTGCTGTAAATTGGATTGAGGGAC
EST: GGACTACCTTCAGGATGACTTCCCTGACATGGATGTCATCAGCATATCAG GTAACTTCTGTTCTGACAAAAAGTCAGCTGCTGTAAATTGGATTGAGGGACEST: gi|218499763|gb|FG954101.1|FG954101
genomic: GGACTACCTTCAGGATGACTTCCCTGACATGGATGTCATCAGCATATCAGgtttttactt ... atacaaacagGTAACTTCTGTTCTGACAAAAAGTCAGCTGCTGTAAATTGGATTGAGGGAC
EST: GGACTACCTTCAGGATGACTTCCCTGACATGGATGTCATCAGCATATCAG GTAACTTCTGTTCTGACAAAAAGTCAGCTGCTGTAAATTGGATTGAGGGACEST: gi|218486101|gb|FG952696.1|FG952696
genomic: GGACTACCTTCAGGATGACTTCCCTGACATGGATGTCATCAGCATATCAGgtttttactt ... atacaaacagGTAACTTCTGTTCTGACAAAAAGTCAGCTGCTGTAAATTGGATTGAGGGAC
EST: GGACTACCTTCAGGATGACTTCCCTGACATGGATGTCATCAGCATATCAG GTAACTTCTGTTCTGACAAAAAGTCAGCTGCTGTAAATTGGATTGAGGGACEST: gi|27576832|gb|CA999526.1|CA999526
genomic: GGACTACCTTCAGGATGACTTCCCTGACATGGATGTCATCAGCATATCAGgtttttactt ... atacaaacagGTAACTTCTGTTCTGACAAAAAGTCAGCTGCTGTAAATTGGATTGAGGGAC
EST: GGACTACCTTCAGGATGACTTCCCTGACATGGATGTCATCAGCATATCAG GTAACTTCTGTTCTGACAAAAAGTCAGCTGCTGTAAATTGGATTGAGGGAC
genomic: GGACTACCTTCAGGATGACTTCCCTGACATGGATGTCATCAGCATATCAGgtttttactt ... atacaaacagGTAACTTCTGTTCTGACAAAAAGTCAGCTGCTGTAAATTGGATTGAGGGAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGGGATGCCATGGGGATGAACATGGTGTCCAAGGGCGTCCAGAACGTGCTGGACTACCTTCAGGATGACTTCCCTGACATGGATGTCATCAGCATATCAGgtttttacttcaatttttaagccatgccatgaaccagtatacttgctttacttttgaagtttattagtctgcggtcacacggcggcttatactcttgtca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggcggct